1.
Carbonic acid
–
Not to be confused with Carbolic acid, an antiquated name for phenol. Carbonic acid is a compound with the chemical formula H2CO3. It is also a name given to solutions of carbon dioxide in water. In physiology, carbonic acid is described as acid or respiratory acid. It plays an important role in the buffer system to maintain acid–base homeostasis. Carbonic acid, which is an acid, forms two kinds of salts, the carbonates and the bicarbonates. In geology, carbonic acid causes limestone to dissolve producing calcium bicarbonate which leads to many features such as stalactites and stalagmites. It was long believed that carbonic acid could not exist as a pure compound, however, in 1991 it was reported that NASA scientists had succeeded in making solid H2CO3 samples. 7×10−3 in pure water and ≈1. 2×10−3 in seawater. Hence, the majority of the dioxide is not converted into carbonic acid. In the absence of a catalyst, the equilibrium is reached quite slowly, the rate constants are 0.039 s−1 for the forward reaction and 23 s−1 for the reverse reaction. The addition of two molecules of water to CO2 would give orthocarbonic acid, C4, which only in minute amounts in aqueous solution. Addition of base to an excess of acid gives bicarbonate. With excess base, carbonic acid reacts to give carbonate salts, bicarbonate is an intermediate in the transport of CO2 out of the body via respiratory gas exchange. This catalysed reaction is reversed in the lungs, where it converts the bicarbonate back into CO2 and this equilibration plays an important role as a buffer in mammalian blood. A2016 theoretical report suggests that carbonic acid may play a role in protonating various nitrogen bases in blood serum. The oceans of the world have absorbed almost half of the CO2 emitted by humans from the burning of fossil fuels and it has been theorized that the extra dissolved carbon dioxide has caused the oceans average surface pH to shift by about −0.1 unit from pre-industrial levels. This theory is known as acidification, even though the ocean remains basic. Carbonic acid is a polyprotic acid — specifically it is diprotic meaning it has two protons which may dissociate from the parent molecule
Carbonic acid
2.
ChemSpider
–
ChemSpider is a database of chemicals. ChemSpider is owned by the Royal Society of Chemistry, the database contains information on more than 50 million molecules from over 500 data sources including, Each chemical is given a unique identifier, which forms part of a corresponding URL. This is an approach to develop an online chemistry database. The search can be used to widen or restrict already found results, structure searching on mobile devices can be done using free apps for iOS and for the Android. The ChemSpider database has been used in combination with text mining as the basis of document markup. The result is a system between chemistry documents and information look-up via ChemSpider into over 150 data sources. ChemSpider was acquired by the Royal Society of Chemistry in May,2009, prior to the acquisition by RSC, ChemSpider was controlled by a private corporation, ChemZoo Inc. The system was first launched in March 2007 in a release form. ChemSpider has expanded the generic support of a database to include support of the Wikipedia chemical structure collection via their WiChempedia implementation. A number of services are available online. SyntheticPages is an interactive database of synthetic chemistry procedures operated by the Royal Society of Chemistry. Users submit synthetic procedures which they have conducted themselves for publication on the site and these procedures may be original works, but they are more often based on literature reactions. Citations to the published procedure are made where appropriate. They are checked by an editor before posting. The pages do not undergo formal peer-review like a journal article. The comments are moderated by scientific editors. The intention is to collect practical experience of how to conduct useful chemical synthesis in the lab, while experimental methods published in an ordinary academic journal are listed formally and concisely, the procedures in ChemSpider SyntheticPages are given with more practical detail. Comments by submitters are included as well, other publications with comparable amounts of detail include Organic Syntheses and Inorganic Syntheses
ChemSpider
–
ChemSpider
3.
PubChem
–
PubChem is a database of chemical molecules and their activities against biological assays. The system is maintained by the National Center for Biotechnology Information, a component of the National Library of Medicine, PubChem can be accessed for free through a web user interface. Millions of compound structures and descriptive datasets can be downloaded via FTP. PubChem contains substance descriptions and small molecules with fewer than 1000 atoms and 1000 bonds, more than 80 database vendors contribute to the growing PubChem database. PubChem consists of three dynamically growing primary databases, as of 28 January 2016, Compounds,82.6 million entries, contains pure and characterized chemical compounds. Substances,198 million entries, contains also mixtures, extracts, complexes, bioAssay, bioactivity results from 1.1 million high-throughput screening programs with several million values. PubChem contains its own online molecule editor with SMILES/SMARTS and InChI support that allows the import and export of all common chemical file formats to search for structures and fragments. In the text search form the database fields can be searched by adding the name in square brackets to the search term. A numeric range is represented by two separated by a colon. The search terms and field names are case-insensitive, parentheses and the logical operators AND, OR, and NOT can be used. AND is assumed if no operator is used, example,0,5000,50,10 -5,5 PubChem was released in 2004. The American Chemical Society has raised concerns about the publicly supported PubChem database and they have a strong interest in the issue since the Chemical Abstracts Service generates a large percentage of the societys revenue. To advocate their position against the PubChem database, ACS has actively lobbied the US Congress, soon after PubChems creation, the American Chemical Society lobbied U. S. Congress to restrict the operation of PubChem, which they asserted competes with their Chemical Abstracts Service
PubChem
–
PubChem
4.
International Chemical Identifier
–
Initially developed by IUPAC and NIST from 2000 to 2005, the format and algorithms are non-proprietary. The continuing development of the standard has supported since 2010 by the not-for-profit InChI Trust. The current version is 1.04 and was released in September 2011, prior to 1.04, the software was freely available under the open source LGPL license, but it now uses a custom license called IUPAC-InChI Trust License. Not all layers have to be provided, for instance, the layer can be omitted if that type of information is not relevant to the particular application. InChIs can thus be seen as akin to a general and extremely formalized version of IUPAC names and they can express more information than the simpler SMILES notation and differ in that every structure has a unique InChI string, which is important in database applications. Information about the 3-dimensional coordinates of atoms is not represented in InChI, the InChI algorithm converts input structural information into a unique InChI identifier in a three-step process, normalization, canonicalization, and serialization. The InChIKey, sometimes referred to as a hashed InChI, is a fixed length condensed digital representation of the InChI that is not human-understandable. The InChIKey specification was released in September 2007 in order to facilitate web searches for chemical compounds and it should be noted that, unlike the InChI, the InChIKey is not unique, though collisions can be calculated to be very rare, they happen. In January 2009 the final 1.02 version of the InChI software was released and this provided a means to generate so called standard InChI, which does not allow for user selectable options in dealing with the stereochemistry and tautomeric layers of the InChI string. The standard InChIKey is then the hashed version of the standard InChI string, the standard InChI will simplify comparison of InChI strings and keys generated by different groups, and subsequently accessed via diverse sources such as databases and web resources. Every InChI starts with the string InChI= followed by the version number and this is followed by the letter S for standard InChIs. The remaining information is structured as a sequence of layers and sub-layers, the layers and sub-layers are separated by the delimiter / and start with a characteristic prefix letter. The six layers with important sublayers are, Main layer Chemical formula and this is the only sublayer that must occur in every InChI. The atoms in the formula are numbered in sequence, this sublayer describes which atoms are connected by bonds to which other ones. Describes how many hydrogen atoms are connected to each of the other atoms, the condensed,27 character standard InChIKey is a hashed version of the full standard InChI, designed to allow for easy web searches of chemical compounds. Most chemical structures on the Web up to 2007 have been represented as GIF files, the full InChI turned out to be too lengthy for easy searching, and therefore the InChIKey was developed. With all databases currently having below 50 million structures, such duplication appears unlikely at present, a recent study more extensively studies the collision rate finding that the experimental collision rate is in agreement with the theoretical expectations. Example, Morphine has the structure shown on the right, as the InChI cannot be reconstructed from the InChIKey, an InChIKey always needs to be linked to the original InChI to get back to the original structure
International Chemical Identifier
–
L -
ascorbic acid
5.
Simplified molecular-input line-entry system
–
The simplified molecular-input line-entry system is a specification in form of a line notation for describing the structure of chemical species using short ASCII strings. SMILES strings can be imported by most molecule editors for conversion back into two-dimensional drawings or three-dimensional models of the molecules, the original SMILES specification was initiated in the 1980s. It has since modified and extended. In 2007, a standard called OpenSMILES was developed in the open-source chemistry community. Other linear notations include the Wiswesser Line Notation, ROSDAL and SLN, the original SMILES specification was initiated by David Weininger at the USEPA Mid-Continent Ecology Division Laboratory in Duluth in the 1980s. The Environmental Protection Agency funded the project to develop SMILES. It has since modified and extended by others, most notably by Daylight Chemical Information Systems. In 2007, a standard called OpenSMILES was developed by the Blue Obelisk open-source chemistry community. Other linear notations include the Wiswesser Line Notation, ROSDAL and SLN, in July 2006, the IUPAC introduced the InChI as a standard for formula representation. SMILES is generally considered to have the advantage of being slightly more human-readable than InChI, the term SMILES refers to a line notation for encoding molecular structures and specific instances should strictly be called SMILES strings. However, the term SMILES is also used to refer to both a single SMILES string and a number of SMILES strings, the exact meaning is usually apparent from the context. The terms canonical and isomeric can lead to confusion when applied to SMILES. The terms describe different attributes of SMILES strings and are not mutually exclusive, typically, a number of equally valid SMILES strings can be written for a molecule. For example, CCO, OCC and CC all specify the structure of ethanol, algorithms have been developed to generate the same SMILES string for a given molecule, of the many possible strings, these algorithms choose only one of them. This SMILES is unique for each structure, although dependent on the algorithm used to generate it. These algorithms first convert the SMILES to a representation of the molecular structure. A common application of canonical SMILES is indexing and ensuring uniqueness of molecules in a database, there is currently no systematic comparison across commercial software to test if such flaws exist in those packages. SMILES notation allows the specification of configuration at tetrahedral centers, and these are structural features that cannot be specified by connectivity alone and SMILES which encode this information are termed isomeric SMILES
Simplified molecular-input line-entry system
–
Generation of SMILES: Break cycles, then write as branches off a main backbone. (Ciprofloxacin)
6.
Chemical formula
–
These are limited to a single typographic line of symbols, which may include subscripts and superscripts. A chemical formula is not a name, and it contains no words. Although a chemical formula may imply certain simple chemical structures, it is not the same as a full chemical structural formula. Chemical formulas can fully specify the structure of only the simplest of molecules and chemical substances, the simplest types of chemical formulas are called empirical formulas, which use letters and numbers indicating the numerical proportions of atoms of each type. Molecular formulas indicate the numbers of each type of atom in a molecule. For example, the formula for glucose is CH2O, while its molecular formula is C6H12O6. This is possible if the relevant bonding is easy to show in one dimension, an example is the condensed molecular/chemical formula for ethanol, which is CH3-CH2-OH or CH3CH2OH. For reasons of structural complexity, there is no condensed chemical formula that specifies glucose, chemical formulas may be used in chemical equations to describe chemical reactions and other chemical transformations, such as the dissolving of ionic compounds into solution. A chemical formula identifies each constituent element by its chemical symbol, in empirical formulas, these proportions begin with a key element and then assign numbers of atoms of the other elements in the compound, as ratios to the key element. For molecular compounds, these numbers can all be expressed as whole numbers. For example, the formula of ethanol may be written C2H6O because the molecules of ethanol all contain two carbon atoms, six hydrogen atoms, and one oxygen atom. Some types of compounds, however, cannot be written with entirely whole-number empirical formulas. An example is boron carbide, whose formula of CBn is a variable non-whole number ratio with n ranging from over 4 to more than 6.5. When the chemical compound of the consists of simple molecules. These types of formulas are known as molecular formulas and condensed formulas. A molecular formula enumerates the number of atoms to reflect those in the molecule, so that the formula for glucose is C6H12O6 rather than the glucose empirical formula. However, except for very simple substances, molecular chemical formulas lack needed structural information, for simple molecules, a condensed formula is a type of chemical formula that may fully imply a correct structural formula. For example, ethanol may be represented by the chemical formula CH3CH2OH
Chemical formula
–
Al 2 (SO 4) 3
7.
Partition coefficient
–
In the physical sciences, a partition-coefficient or distribution-coefficient is the ratio of concentrations of a compound in a mixture of two immiscible phases at equilibrium. This ratio is therefore a measure of the difference in solubility of the compound in two phases. In the chemical and pharmaceutical sciences, both phases usually are solvents, most commonly, one of the solvents is water while the second is hydrophobic such as 1-octanol. Hence the partition coefficient measures how hydrophilic or hydrophobic a chemical substance is, partition coefficients are useful in estimating the distribution of drugs within the body. Hydrophobic drugs with high octanol/water partition coefficients are distributed to hydrophobic areas such as lipid bilayers of cells. Conversely hydrophilic drugs are primarily in aqueous regions such as blood serum. If one of the solvents is a gas and the other a liquid, for example, the blood/gas partition coefficient of a general anesthetic measures how easily the anesthetic passes from gas to blood. Partition coefficients can also be defined one of the phases is solid, for instance, when one phase is a molten metal. The partitioning of a substance into a solid results in a solid solution, partition coefficients can be measured experimentally in various ways or estimated via calculation based on a variety of methods. Despite formal recommendation to the contrary, the partition coefficient remains the predominantly used term in the scientific literature. In contrast, the IUPAC recommends that the term no longer be used, rather. When one of the solvents is water and the other is a non-polar solvent, for measurements of distribution coefficients, the pH of the aqueous phase is buffered to a specific value such that the pH is not significantly perturbed by the introduction of the compound. In addition, since log D is pH-dependent, the pH at which the log D was measured must be specified. In areas such as drug discovery—areas involving partition phenomena in systems such as the human body—the log D at the physiologic pH,7.4, is of particular interest. It is often convenient to express the log D in terms of P I, defined above, the values in the following table are from the Dortmund Data Bank. They are sorted by the coefficient, smallest to largest. Values for other compounds may be found in a variety of available reviews, critical discussions of the challenges of measurement of log P, and related computation of its estimated values, appear in several reviews. Hence, the log P of a molecule is one used in decision-making by medicinal chemists in pre-clinical drug discovery, for example
Partition coefficient
–
Two phase system, hydrophobic (top) and hydrophilic (bottom) for measuring the partition coefficient of compounds.
8.
Acid dissociation constant
–
An acid dissociation constant, Ka, is a quantitative measure of the strength of an acid in solution. It is the constant for a chemical reaction known as dissociation in the context of acid–base reactions. In the example shown in the figure, HA represents acetic acid, and A− represents the acetate ion, the chemical species HA, A− and H3O+ are said to be in equilibrium when their concentrations do not change with the passing of time. The definition can then be more simply H A ⇌ A − + H +, K a = This is the definition in common usage. A weak acid has a pKa value in the approximate range −2 to 12 in water, pKa values for strong acids can, however, be estimated by theoretical means. The definition can be extended to non-aqueous solvents, such as acetonitrile and dimethylsulfoxide. Denoting a solvent molecule by S H A + S ⇌ A − + S H +, K a = When the concentration of solvent molecules can be taken to be constant, K a =, as before. The value of pKa also depends on structure of the acid in many ways. For example, Pauling proposed two rules, one for successive pKa of polyprotic acids, and one to estimate the pKa of oxyacids based on the number of =O and −OH groups. Other structural factors that influence the magnitude of the dissociation constant include inductive effects, mesomeric effects. Hammett type equations have frequently applied to the estimation of pKa. The quantitative behaviour of acids and bases in solution can be only if their pKa values are known. These calculations find application in different areas of chemistry, biology, medicine. Acid dissociation constants are essential in aquatic chemistry and chemical oceanography. In living organisms, acid–base homeostasis and enzyme kinetics are dependent on the pKa values of the acids and bases present in the cell. According to Arrheniuss original definition, an acid is a substance that dissociates in solution, releasing the hydrogen ion H+. The equilibrium constant for this reaction is known as a dissociation constant. Brønsted and Lowry generalised this further to an exchange reaction
Acid dissociation constant
9.
Inorganic chemistry
–
Inorganic chemistry deals with the synthesis and behavior of inorganic and organometallic compounds. This field covers all chemical compounds except the myriad organic compounds, the distinction between the two disciplines is far from absolute, as there is much overlap in the subdiscipline of organometallic chemistry. It has applications in every aspect of the industry, including catalysis, materials science, pigments, surfactants, coatings, medications, fuels. Many inorganic compounds are compounds, consisting of cations and anions joined by ionic bonding. Examples of salts are magnesium chloride MgCl2, which consists of magnesium cations Mg2+ and chloride anions Cl−, or sodium oxide Na2O, in any salt, the proportions of the ions are such that the electric charges cancel out, so that the bulk compound is electrically neutral. The ions are described by their state and their ease of formation can be inferred from the ionization potential or from the electron affinity of the parent elements. Important classes of compounds are the oxides, the carbonates, the sulfates. Many inorganic compounds are characterized by high melting points, inorganic salts typically are poor conductors in the solid state. Other important features include their high meilting point and ease of crystallization, where some salts are very soluble in water, others are not. The simplest inorganic reaction is double displacement when in mixing of two salts the ions are swapped without a change in oxidation state, in redox reactions one reactant, the oxidant, lowers its oxidation state and another reactant, the reductant, has its oxidation state increased. The net result is an exchange of electrons, electron exchange can occur indirectly as well, e. g. in batteries, a key concept in electrochemistry. When one reactant contains hydrogen atoms, a reaction can take place by exchanging protons in acid-base chemistry, as a refinement of acid-base interactions, the HSAB theory takes into account polarizability and size of ions. Inorganic compounds are found in nature as minerals, soil may contain iron sulfide as pyrite or calcium sulfate as gypsum. Inorganic compounds are also found multitasking as biomolecules, as electrolytes, the first important man-made inorganic compound was ammonium nitrate for soil fertilization through the Haber process. Inorganic compounds are synthesized for use as such as vanadium oxide and titanium chloride. Subdivisions of inorganic chemistry are organometallic chemistry, cluster chemistry and bioinorganic chemistry and these fields are active areas of research in inorganic chemistry, aimed toward new catalysts, superconductors, and therapies. Inorganic chemistry is a highly practical area of science, traditionally, the scale of a nations economy could be evaluated by their productivity of sulfuric acid. The manufacturing of fertilizers is another application of industrial inorganic chemistry
Inorganic chemistry
–
Inorganic compounds show rich variety: A:
Diborane features
unusual bonding B:
Caesium chloride has an archetypal
crystal structure C:
Fp2 is an
organometallic complex D:
Silicone 's uses range from
breast implants to
Silly Putty E:
Grubbs' catalyst won the
2005 Nobel Prize for
its discoverer F:
Zeolites find extensive use as
molecular sieves G:
Copper(II) acetate surprised
theoreticians with its
diamagnetism
Inorganic chemistry
–
The structure of the ionic framework in
potassium oxide, K 2 O
10.
International Union of Pure and Applied Chemistry
–
The International Union of Pure and Applied Chemistry /ˈaɪjuːpæk/ or /ˈjuːpæk/ is an international federation of National Adhering Organizations that represents chemists in individual countries. It is a member of the International Council for Science, IUPAC is registered in Zürich, Switzerland, and the administrative office, known as the IUPAC Secretariat, is in Research Triangle Park, North Carolina, United States. This administrative office is headed by IUPACs executive director, currently Lynn Soby, IUPAC was established in 1919 as the successor of the International Congress of Applied Chemistry for the advancement of chemistry. Its members, the National Adhering Organizations, can be national chemistry societies, national academies of sciences, there are fifty-four National Adhering Organizations and three Associate National Adhering Organizations. IUPACs Inter-divisional Committee on Nomenclature and Symbols is the world authority in developing standards for the naming of the chemical elements. Since its creation, IUPAC has been run by different committees with different responsibilities. These committees run different projects which include standardizing nomenclature, finding ways to bring chemistry to the world, IUPAC is best known for its works standardizing nomenclature in chemistry and other fields of science, but IUPAC has publications in many fields including chemistry, biology and physics. IUPAC is also known for standardizing the atomic weights of the elements through one of its oldest standing committees, the need for an international standard for chemistry was first addressed in 1860 by a committee headed by German scientist Friedrich August Kekulé von Stradonitz. This committee was the first international conference to create an international naming system for organic compounds, the ideas that were formulated in that conference evolved into the official IUPAC nomenclature of organic chemistry. IUPAC stands as a legacy of this meeting, making it one of the most important historical international collaborations of chemistry societies, since this time, IUPAC has been the official organization held with the responsibility of updating and maintaining official organic nomenclature. IUPAC as such was established in 1919, one notable country excluded from this early IUPAC is Germany. Germanys exclusion was a result of prejudice towards Germans by the Allied powers after World War I, Germany was finally admitted into IUPAC during 1929. However, Nazi Germany was removed from IUPAC during World War II, during World War II, IUPAC was affiliated with the Allied powers, but had little involvement during the war effort itself. After the war, East and West Germany were eventually readmitted to IUPAC, since World War II, IUPAC has been focused on standardizing nomenclature and methods in science without interruption. In 2016, IUPAC denounced the use of chlorine as a chemical weapon, the letter stated, Our organizations deplore the use of chlorine in this manner. According to the CWC, the use, stockpiling, distribution, IUPAC is governed by several committees that all have different responsibilities. Each committee is made up of members of different National Adhering Organizations from different countries, the steering committee hierarchy for IUPAC is as follows, All committees have an allotted budget to which they must adhere. Any committee may start a project, if a projects spending becomes too much for a committee to continue funding, it must take the issue to the Project Committee
International Union of Pure and Applied Chemistry
–
Friedrich August Kekulé von Stradonitz
International Union of Pure and Applied Chemistry
–
International Union of Pure and Applied Chemistry
11.
Polyatomic ion
–
The prefix poly- means many, in Greek, but even ions of two atoms are commonly referred to as polyatomic. In older literature, an ion is also referred to as a radical. In contemporary usage, the term refers to free radicals that are species with an unpaired electron. An example of an ion is the hydroxide ion, consisting of one oxygen atom and one hydrogen atom. An ammonium ion is made up of one atom and four hydrogen atoms, it has a charge of +1. Polyatomic ions are often useful in the context of chemistry or in the formation of salts. A polyatomic ion can often be considered as the conjugate acid/base of a neutral molecule, for example, the conjugate base of sulfuric acid is the polyatomic hydrogen sulfate anion. The removal of hydrogen ion yields the sulfate anion. There are two rules that can be used for learning the nomenclature of polyatomic anions. First, when the prefix bi is added to a name, a hydrogen is added to the formula and its charge is increased by 1. An alternative to the bi- prefix is to use the hydrogen in its place. Note that many of the common polyatomic anions are conjugate bases of acids derived from the oxides of non-metallic elements, for example, the sulfate anion, SO42−, is derived from H 2SO4, which can be regarded as SO3 + H 2O. The second rule looks at the number of oxygens in an ion, consider the chlorine oxoanion family, First, think of the -ate ion as being the base name, in which case the addition of a per- prefix adds an oxygen. Changing the -ate suffix to -ite will reduce the oxygens by one, in all situations, the charge is not affected. The naming pattern follows within many different oxyanion series based on a root for that particular series. The -ite has one less oxygen than the -ate, but different -ate anions might have different numbers of oxygen atoms and these rules will not work with all polyatomic anions, but they do work with the most common ones. The following tables give examples of commonly encountered polyatomic ions, only a few representatives are given, as the number of polyatomic ions encountered in practice is very large. Monatomic ions Salt Mass spectrometry Hydrogen peroxide Molecule Hydrogen molecular ion List of polyatomic ions A Beginners Guide To Polyatomic Ions, tables of Common Polyatomic Ions, including PDB files
Polyatomic ion
–
An
electrostatic potential map of the
nitrate ion (
N O 3 −). Areas coloured translucent red, around the outside of the red oxygen atoms themselves, signify the regions of most negative electrostatic potential
12.
Anion
–
An ion is an atom or a molecule in which the total number of electrons is not equal to the total number of protons, giving the atom or molecule a net positive or negative electrical charge. Ions can be created, by chemical or physical means. In chemical terms, if an atom loses one or more electrons. If an atom gains electrons, it has a net charge and is known as an anion. Ions consisting of only a single atom are atomic or monatomic ions, because of their electric charges, cations and anions attract each other and readily form ionic compounds, such as salts. In the case of ionization of a medium, such as a gas, which are known as ion pairs are created by ion impact, and each pair consists of a free electron. The word ion comes from the Greek word ἰόν, ion, going and this term was introduced by English physicist and chemist Michael Faraday in 1834 for the then-unknown species that goes from one electrode to the other through an aqueous medium. Faraday also introduced the words anion for a charged ion. In Faradays nomenclature, cations were named because they were attracted to the cathode in a galvanic device, arrhenius explanation was that in forming a solution, the salt dissociates into Faradays ions. Arrhenius proposed that ions formed even in the absence of an electric current, ions in their gas-like state are highly reactive, and do not occur in large amounts on Earth, except in flames, lightning, electrical sparks, and other plasmas. These gas-like ions rapidly interact with ions of charge to give neutral molecules or ionic salts. These stabilized species are commonly found in the environment at low temperatures. A common example is the present in seawater, which are derived from the dissolved salts. Electrons, due to their mass and thus larger space-filling properties as matter waves, determine the size of atoms. Thus, anions are larger than the parent molecule or atom, as the excess electron repel each other, as such, in general, cations are smaller than the corresponding parent atom or molecule due to the smaller size of its electron cloud. One particular cation contains no electrons, and thus consists of a single proton - very much smaller than the parent hydrogen atom. Since the electric charge on a proton is equal in magnitude to the charge on an electron, an anion, from the Greek word ἄνω, meaning up, is an ion with more electrons than protons, giving it a net negative charge. A cation, from the Greek word κατά, meaning down, is an ion with fewer electrons than protons, there are additional names used for ions with multiple charges
Anion
13.
Hydrogen
–
Hydrogen is a chemical element with chemical symbol H and atomic number 1. With a standard weight of circa 1.008, hydrogen is the lightest element on the periodic table. Its monatomic form is the most abundant chemical substance in the Universe, non-remnant stars are mainly composed of hydrogen in the plasma state. The most common isotope of hydrogen, termed protium, has one proton, the universal emergence of atomic hydrogen first occurred during the recombination epoch. At standard temperature and pressure, hydrogen is a colorless, odorless, tasteless, non-toxic, nonmetallic, since hydrogen readily forms covalent compounds with most nonmetallic elements, most of the hydrogen on Earth exists in molecular forms such as water or organic compounds. Hydrogen plays an important role in acid–base reactions because most acid-base reactions involve the exchange of protons between soluble molecules. In ionic compounds, hydrogen can take the form of a charge when it is known as a hydride. The hydrogen cation is written as though composed of a bare proton, Hydrogen gas was first artificially produced in the early 16th century by the reaction of acids on metals. Industrial production is mainly from steam reforming natural gas, and less often from more energy-intensive methods such as the electrolysis of water. Most hydrogen is used near the site of its production, the two largest uses being fossil fuel processing and ammonia production, mostly for the fertilizer market, Hydrogen is a concern in metallurgy as it can embrittle many metals, complicating the design of pipelines and storage tanks. Hydrogen gas is flammable and will burn in air at a very wide range of concentrations between 4% and 75% by volume. The enthalpy of combustion is −286 kJ/mol,2 H2 + O2 →2 H2O +572 kJ Hydrogen gas forms explosive mixtures with air in concentrations from 4–74%, the explosive reactions may be triggered by spark, heat, or sunlight. The hydrogen autoignition temperature, the temperature of spontaneous ignition in air, is 500 °C, the detection of a burning hydrogen leak may require a flame detector, such leaks can be very dangerous. Hydrogen flames in other conditions are blue, resembling blue natural gas flames, the destruction of the Hindenburg airship was a notorious example of hydrogen combustion and the cause is still debated. The visible orange flames in that incident were the result of a mixture of hydrogen to oxygen combined with carbon compounds from the airship skin. H2 reacts with every oxidizing element, the ground state energy level of the electron in a hydrogen atom is −13.6 eV, which is equivalent to an ultraviolet photon of roughly 91 nm wavelength. The energy levels of hydrogen can be calculated fairly accurately using the Bohr model of the atom, however, the atomic electron and proton are held together by electromagnetic force, while planets and celestial objects are held by gravity. The most complicated treatments allow for the effects of special relativity
Hydrogen
–
Purple glow in its plasma state
Hydrogen
–
The
Space Shuttle Main Engine burnt hydrogen with oxygen, producing a nearly invisible flame at full thrust.
Hydrogen
–
Spectral lines of hydrogen
Hydrogen
–
First tracks observed in
liquid hydrogen bubble chamber at the
Bevatron
14.
Carbon
–
Carbon is a chemical element with symbol C and atomic number 6. It is nonmetallic and tetravalent—making four electrons available to form covalent chemical bonds, three isotopes occur naturally, 12C and 13C being stable, while 14C is a radioactive isotope, decaying with a half-life of about 5,730 years. Carbon is one of the few elements known since antiquity, Carbon is the 15th most abundant element in the Earths crust, and the fourth most abundant element in the universe by mass after hydrogen, helium, and oxygen. It is the second most abundant element in the body by mass after oxygen. The atoms of carbon can bond together in different ways, termed allotropes of carbon, the best known are graphite, diamond, and amorphous carbon. The physical properties of carbon vary widely with the allotropic form, for example, graphite is opaque and black while diamond is highly transparent. Graphite is soft enough to form a streak on paper, while diamond is the hardest naturally occurring material known, graphite is a good electrical conductor while diamond has a low electrical conductivity. Under normal conditions, diamond, carbon nanotubes, and graphene have the highest thermal conductivities of all known materials, all carbon allotropes are solids under normal conditions, with graphite being the most thermodynamically stable form. They are chemically resistant and require high temperature to react even with oxygen, the most common oxidation state of carbon in inorganic compounds is +4, while +2 is found in carbon monoxide and transition metal carbonyl complexes. The largest sources of carbon are limestones, dolomites and carbon dioxide, but significant quantities occur in organic deposits of coal, peat, oil. For this reason, carbon has often referred to as the king of the elements. The allotropes of carbon graphite, one of the softest known substances, and diamond. It bonds readily with other small atoms including other carbon atoms, Carbon is known to form almost ten million different compounds, a large majority of all chemical compounds. Carbon also has the highest sublimation point of all elements, although thermodynamically prone to oxidation, carbon resists oxidation more effectively than elements such as iron and copper that are weaker reducing agents at room temperature. Carbon is the element, with a ground-state electron configuration of 1s22s22p2. Its first four ionisation energies,1086.5,2352.6,4620.5 and 6222.7 kJ/mol, are higher than those of the heavier group 14 elements. Carbons covalent radii are normally taken as 77.2 pm,66.7 pm and 60.3 pm, although these may vary depending on coordination number, in general, covalent radius decreases with lower coordination number and higher bond order. Carbon compounds form the basis of all life on Earth
Carbon
–
Graphite (left) and diamond (right), the two most well-known allotropes of carbon
Carbon
–
Spectral lines of carbon
Carbon
–
A large sample of glassy carbon.
Carbon
–
Graphite ore
15.
Oxygen
–
Oxygen is a chemical element with symbol O and atomic number 8. It is a member of the group on the periodic table and is a highly reactive nonmetal. By mass, oxygen is the third-most abundant element in the universe, after hydrogen, at standard temperature and pressure, two atoms of the element bind to form dioxygen, a colorless and odorless diatomic gas with the formula O2. This is an important part of the atmosphere and diatomic oxygen gas constitutes 20. 8% of the Earths atmosphere, additionally, as oxides the element makes up almost half of the Earths crust. Most of the mass of living organisms is oxygen as a component of water, conversely, oxygen is continuously replenished by photosynthesis, which uses the energy of sunlight to produce oxygen from water and carbon dioxide. Oxygen is too reactive to remain a free element in air without being continuously replenished by the photosynthetic action of living organisms. Another form of oxygen, ozone, strongly absorbs ultraviolet UVB radiation, but ozone is a pollutant near the surface where it is a by-product of smog. At low earth orbit altitudes, sufficient atomic oxygen is present to cause corrosion of spacecraft, the name oxygen was coined in 1777 by Antoine Lavoisier, whose experiments with oxygen helped to discredit the then-popular phlogiston theory of combustion and corrosion. One of the first known experiments on the relationship between combustion and air was conducted by the 2nd century BCE Greek writer on mechanics, Philo of Byzantium. In his work Pneumatica, Philo observed that inverting a vessel over a burning candle, Philo incorrectly surmised that parts of the air in the vessel were converted into the classical element fire and thus were able to escape through pores in the glass. Many centuries later Leonardo da Vinci built on Philos work by observing that a portion of air is consumed during combustion and respiration, Oxygen was discovered by the Polish alchemist Sendivogius, who considered it the philosophers stone. In the late 17th century, Robert Boyle proved that air is necessary for combustion, English chemist John Mayow refined this work by showing that fire requires only a part of air that he called spiritus nitroaereus. From this he surmised that nitroaereus is consumed in both respiration and combustion, Mayow observed that antimony increased in weight when heated, and inferred that the nitroaereus must have combined with it. Accounts of these and other experiments and ideas were published in 1668 in his work Tractatus duo in the tract De respiratione. Robert Hooke, Ole Borch, Mikhail Lomonosov, and Pierre Bayen all produced oxygen in experiments in the 17th and the 18th century but none of them recognized it as a chemical element. This may have been in part due to the prevalence of the philosophy of combustion and corrosion called the phlogiston theory, which was then the favored explanation of those processes. Established in 1667 by the German alchemist J. J. Becher, one part, called phlogiston, was given off when the substance containing it was burned, while the dephlogisticated part was thought to be its true form, or calx. The fact that a substance like wood gains overall weight in burning was hidden by the buoyancy of the combustion products
Oxygen
–
Spectral lines of oxygen
Oxygen
Oxygen
–
A trickle of liquid oxygen is deflected by a magnetic field, illustrating its paramagnetic property
Oxygen
–
Oxygen discharge (spectrum) tube. The green color is similar to the color of an
"aurora borealis"
16.
PH
–
In chemistry, pH is a numeric scale used to specify the acidity or basicity of an aqueous solution. It is approximately the negative of the base 10 logarithm of the concentration, measured in units of moles per liter. More precisely it is the negative of the logarithm to base 10 of the activity of the hydrogen ion, solutions with a pH less than 7 are acidic and solutions with a pH greater than 7 are basic. Pure water is neutral, at pH7, being neither an acid nor a base, contrary to popular belief, the pH value can be less than 0 or greater than 14 for very strong acids and bases respectively. The pH scale is traceable to a set of standard solutions whose pH is established by international agreement, the pH of aqueous solutions can be measured with a glass electrode and a pH meter, or an indicator. In the first papers, the notation had the H as a subscript to the p, as so. The exact meaning of the p in pH is disputed, but according to the Carlsberg Foundation and it has also been suggested that the p stands for the German Potenz, others refer to French puissance. Another suggestion is that the p stands for the Latin terms pondus hydrogenii, potentia hydrogenii and it is also suggested that Sørensen used the letters p and q simply to label the test solution and the reference solution. Currently in chemistry, the p stands for decimal cologarithm of, PH is defined as the decimal logarithm of the reciprocal of the hydrogen ion activity, aH+, in a solution. P H = − log 10 = log 10 For example and this definition was adopted because ion-selective electrodes, which are used to measure pH, respond to activity. For H+ number of electrons transferred is one and it follows that electrode potential is proportional to pH when pH is defined in terms of activity. The reference electrode may be a silver chloride electrode or a calomel electrode, the hydrogen-ion selective electrode is a standard hydrogen electrode. Reference electrode | concentrated solution of KCl || test solution | H2 | Pt Firstly, the cell is filled with a solution of hydrogen ion activity. Then the emf, EX, of the cell containing the solution of unknown pH is measured. PH = pH + E S − E X z The difference between the two measured emf values is proportional to pH and this method of calibration avoids the need to know the standard electrode potential. The proportionality constant, 1/z is ideally equal to 12.303 R T / F the Nernstian slope, to apply this process in practice, a glass electrode is used rather than the cumbersome hydrogen electrode. A combined glass electrode has a reference electrode. It is calibrated against buffer solutions of hydrogen ion activity
PH
–
Lemon juice tastes sour because it contains 5% to 6%
citric acid, which has a pH of 2.2.
PH
–
Chart showing the variation of color of universal indicator paper with pH
PH
–
pH values of some common substances
17.
Buffering solution
–
For an individual weak acid or weak base component, see Buffering agent. For uses not related to chemistry, see Buffer. A buffer solution is an aqueous solution consisting of a mixture of an acid and its conjugate base. Its pH changes very little when a small amount of acid or base is added to it. Buffer solutions are used as a means of keeping pH at a constant value in a wide variety of chemical applications. In nature, there are systems that use buffering for pH regulation. For example, the buffering system is used to regulate the pH of blood. Buffer solutions achieve their resistance to pH change because of the presence of an equilibrium between the acid HA and its conjugate base A−. HA ⇌ H+ + A− When some strong acid is added to a mixture of the weak acid and its conjugate base. Because of this, the ion concentration increases by less than the amount expected for the quantity of strong acid added. Similarly, if strong alkali is added to the mixture the hydrogen ion concentration decreases by less than the amount expected for the quantity of alkali added, the effect is illustrated by the simulated titration of a weak acid with pKa =4.7. The relative concentration of undissociated acid is shown in blue and of its base in red. The pH changes relatively slowly in the region, pH = pKa ±1. OH− + H+ → H2O Once the acid is more than 95% deprotonated the pH rises rapidly because most of the alkali is consumed in the neutralization reaction. Buffer capacity, β, is a measure of the resistance of a buffer solution to pH change on addition of hydroxide ions. It can be defined as follows, β = d n d where dn is an infinitesimal amount of added base and d is the resulting infinitesimal change in the cologarithm of the hydrogen ion concentration. With this definition the buffer capacity of an acid, with a dissociation constant Ka. This equation shows that there are three regions of raised buffer capacity, at very low p the term in the denominator predominates and buffer capacity rises exponentially with decreasing pH
Buffering solution
–
Simulated
titration of an acidified solution of a weak acid (pK a = 4.7) with alkali.
18.
William Hyde Wollaston
–
William Hyde Wollaston PRS was an English chemist and physicist who is famous for discovering the chemical elements palladium and rhodium. He also developed a way to process ore into malleable ingots. Wollaston was born in East Dereham, Norfolk, the son of the priest-astronomer Francis Wollaston, the family, which included 17 children, was financially well-off and were part of an intellectually stimulating environment. He worked as a physician in rural areas between 1793 and 1797, then moved to London, during his studies, Wollaston had become interested in chemistry, crystallography, metallurgy and physics. In 1800, after he had received a sum of money from one of his older brothers. He concentrated on pursuing his interests in chemistry and other subjects outside his trained vocation and he was elected a Fellow of the Royal Society in 1793, where he became an influential member. He served as president in 1820, in 1822 he was elected a Foreign Honorary Member of the American Academy of Arts and Sciences. He died in London in 1828 and was buried in Chislehurst, chemical analysis related to the process of purifying platinum led Wollaston to discover the elements palladium in 1802 and rhodium in 1804. Anders Gustav Ekeberg discovered tantalum in 1802, however, Wollaston declared it was identical with niobium, later Heinrich Rose proved in 1846 that columbium and tantalum were indeed different elements and he renamed columbium niobium. The mineral wollastonite was later named after Wollaston for his contributions to crystallography, Wollaston also performed important work in electricity. In 1801, he performed an experiment showing that the electricity from friction was identical to that produced by voltaic piles, controversy erupted when Michael Faraday constructed the first working electric motor and hastily published his results without acknowledging Wollastons previous work. Wollaston, however, saw nothing wrong with Faradays action and his optical work was important as well, where he is remembered for his observations of dark Fraunhofer lines in the solar spectrum, which eventually led to the discovery of the elements in the Sun. He invented the camera lucida, the goniometer, and the Wollaston prism. He also developed the first lens specifically for camera lens called Wollastons meniscus lens, or just meniscus lens, the lens was designed to improve the image projected by the camera obscura. By changing the shape of the lens, Wollaston was able to project a flatter image, Wollaston also devised a cryophorus, a glass container containing liquid water and water vapor. It is used in courses to demonstrate rapid freezing by evaporation. He used his Bakerian lecture in 1805, On the Force of Percussion, to defend Gottfried Leibnizs principle of vis viva, Wollastons attempt to demonstrate the presence of glucose in the blood serum of diabetics was unsuccessful due to the limited means of detection available to him. Wollaston supported this theory by referring to the thesis of a medical student at Edinburgh, Charles Darwin
William Hyde Wollaston
–
William Hyde Wollaston
19.
Carbonate
–
In chemistry, a carbonate is a salt of carbonic acid, characterized by the presence of the carbonate ion, a polyatomic ion with the formula of CO2−3. The name may mean an ester of carbonic acid, an organic compound containing the carbonate group C2. In geology and mineralogy, the term carbonate can refer both to carbonate minerals and carbonate rock, and both are dominated by the ion, CO2−3. Carbonate minerals are extremely varied and ubiquitous in chemically precipitated sedimentary rock, sodium carbonate and potassium carbonate have been used since antiquity for cleaning and preservation, as well as for the manufacture of glass. Carbonates are widely used in industry, e. g. in iron smelting, as a raw material for Portland cement and lime manufacture, in the composition of ceramic glazes, the carbonate ion is the simplest oxocarbon anion. It consists of one carbon atom surrounded by three oxygen atoms, in a planar arrangement, with D3h molecular symmetry. It has a mass of 60.01 g/mol and carries a total formal charge of −2. It is the base of the hydrogen carbonate ion, HCO−3. The Lewis structure of the ion has two single bonds to negative oxygen atoms, and one short double bond to a neutral oxygen. This structure is incompatible with the symmetry of the ion. This process is called calcination, after calx, the Latin name of quicklime or calcium oxide, CaO, exceptions include lithium, sodium, potassium and ammonium carbonates, as well as many uranium carbonates. In aqueous solution, carbonate, bicarbonate, carbon dioxide, in strongly basic conditions, the carbonate ion predominates, while in weakly basic conditions, the bicarbonate ion is prevalent. In more acid conditions, aqueous carbon dioxide, CO2, is the main form, thus sodium carbonate is basic, sodium bicarbonate is weakly basic, while carbon dioxide itself is a weak acid. Carbonated water is formed by dissolving CO2 in water under pressure, in living systems an enzyme, carbonic anhydrase, speeds the interconversion of CO2 and carbonic acid. Although the carbonate salts of most metals are insoluble in water, in solution this equilibrium between carbonate, bicarbonate, carbon dioxide and carbonic acid changes consonant to changing temperature and pressure conditions. In the case of ions with insoluble carbonates, e. g. CaCO3. This is an explanation for the buildup of scale inside pipes caused by hard water, in organic chemistry a carbonate can also refer to a functional group within a larger molecule that contains a carbon atom bound to three oxygen atoms, one of which is double bonded. These compounds are known as organocarbonates or carbonate esters, and have the general formula ROCOOR′
Carbonate
–
Carbonate
20.
Sodium carbonate
–
Sodium carbonate, Na2CO3, is the water-soluble sodium salt of carbonic acid. It most commonly occurs as a crystalline decahydrate, which readily effloresces to form a white powder, pure sodium carbonate is a white, odorless powder that is hygroscopic. It has a strongly alkaline taste, and forms a basic solution in water. Sodium carbonate is known domestically for its everyday use as a water softener. Historically it was extracted from the ashes of plants growing in soils, such as vegetation from the Middle East, kelp from Scotland. Because the ashes of these plants were noticeably different from ashes of timber. It is synthetically produced in quantities from salt and limestone by a method known as the Solvay process. The manufacture of glass is one of the most important uses of sodium carbonate, Sodium carbonate acts as a flux for silica, lowering the melting point of the mixture to something achievable without special materials. This soda glass is mildly water-soluble, so some calcium carbonate is added to the mixture to make the glass produced insoluble. This type of glass is known as soda lime glass, soda for the sodium carbonate, soda lime glass has been the most common form of glass for centuries. Sodium carbonate is used as a relatively strong base in various settings. For example, it is used as a pH regulator to maintain stable alkaline conditions necessary for the action of the majority of film developing agents. It acts as an alkali because when dissolved in water, it dissociates into the acid, carbonic acid. This gives sodium carbonate in solution the ability to attack such as aluminium with the release of hydrogen gas. It is an additive in swimming pools used to raise the ph which can be lowered by chlorine tablets. In cooking, it is used in place of sodium hydroxide for lyeing, especially with German pretzels. These dishes are treated with a solution of a substance to change the pH of the surface of the food. In chemistry, it is used as an electrolyte
Sodium carbonate
–
Sodium carbonate
Sodium carbonate
21.
Trivial name
–
In chemistry, a trivial name is a nonsystematic name for a chemical substance. That is, the name is not recognized according to the rules of any system of chemical nomenclature such as IUPAC inorganic or IUPAC organic nomenclature. A trivial name is not a name and is usually a common name. Generally, trivial names are not useful in describing the properties of the thing being named. Properties such as the structure of a chemical compound are not indicated. And, in cases, trivial names can be ambiguous or will carry different meanings in different industries or in different geographic regions. On the other hand, systematic names can be so convoluted, as a result, a limited number of trivial chemical names are retained names, an accepted part of the nomenclature. Trivial names often arise in the language, they may come from historic usages in, for example. Many trivial names pre-date the institution of formal naming conventions, all elements that have been isolated have trivial names. In scientific documents, international treaties, patents and legal definitions and this need is satisfied by systematic names. One such system, established by the International Union of Pure, other systems have been developed by the American Chemical Society, the International Organization for Standardization, and the World Health Organization. However, chemists still use names that are not systematic because they are traditional or because they are more convenient than the systematic names. The word trivial, often used in a sense, was intended to mean commonplace. In addition to names, chemists have constructed semi-trivial names by appending a standard symbol to a trivial stem. Some trivial and semi-trivial names are so used that they have been officially adopted by IUPAC. Traditional names of elements are trivial, some originating in alchemy, IUPAC has accepted these names, but has also defined systematic names of elements that have not yet been prepared. It has adopted a procedure by which the scientists who are credited with preparing an element can propose a new name, once the IUPAC has accepted such a name, it replaces the systematic name. Nine elements were known by the Middle Ages – gold, silver, tin, mercury, copper, lead, iron, sulfur, and carbon
Trivial name
–
The element
mercury was named after the Roman god (painting by
Hendrik Goltzius).
Trivial name
–
A plaque commemorating a mine in
Ytterby where ore was obtained from which four new elements were isolated.
Trivial name
–
The antibiotic
Rudolphomycin is named after the character Rodolfo from the opera
La Bohème.
22.
Atomic mass unit
–
The unified atomic mass unit or dalton is a standard unit of mass that quantifies mass on an atomic or molecular scale. One unified atomic mass unit is approximately the mass of one nucleon and is equivalent to 1 g/mol. The CIPM has categorised it as a non-SI unit accepted for use with the SI, the amu without the unified prefix is technically an obsolete unit based on oxygen, which was replaced in 1961. However, many still use the term amu but now define it in the same way as u. In this sense, most uses of the atomic mass units. For standardization a specific atomic nucleus had to be chosen because the mass of a nucleon depends on the count of the nucleons in the atomic nucleus due to mass defect. This is also why the mass of a proton or neutron by itself is more than 1 u, the atomic mass unit is not the unit of mass in the atomic units system, which is rather the electron rest mass. The relative atomic mass scale has traditionally been a relative value and this evaluation was made prior to the discovery of the existence of elemental isotopes, which occurred in 1912. The divergence of these values could result in errors in computations, the chemistry amu, based on the relative atomic mass of natural oxygen, was about 1.000282 as massive as the physics amu, based on pure isotopic 16O. For these and other reasons, the standard for both physics and chemistry was changed to carbon-12 in 1961. The choice of carbon-12 was made to minimise further divergence with prior literature. The new and current unit was referred to as the atomic mass unit u. and given a new symbol, u. The Dalton is another name for the atomic mass unit. 1 u = m u =112 m Despite this change, modern sources often use the old term amu but define it as u. Therefore, in general, amu likely does not refer to the old oxygen standard unit, the unified atomic mass unit and the dalton are different names for the same unit of measure. As with other names such as watt and newton, dalton is not capitalized in English. In 2003 the Consultative Committee for Units, part of the CIPM, recommended a preference for the usage of the dalton over the atomic mass unit as it is shorter. In 2005, the International Union of Pure and Applied Physics endorsed the use of the dalton as an alternative to the atomic mass unit
Atomic mass unit
–
Base units
23.
Atom
–
An atom is the smallest constituent unit of ordinary matter that has the properties of a chemical element. Every solid, liquid, gas, and plasma is composed of neutral or ionized atoms, Atoms are very small, typical sizes are around 100 picometers. Atoms are small enough that attempting to predict their behavior using classical physics - as if they were billiard balls, through the development of physics, atomic models have incorporated quantum principles to better explain and predict the behavior. Every atom is composed of a nucleus and one or more bound to the nucleus. The nucleus is made of one or more protons and typically a number of neutrons. Protons and neutrons are called nucleons, more than 99. 94% of an atoms mass is in the nucleus. The protons have an electric charge, the electrons have a negative electric charge. If the number of protons and electrons are equal, that atom is electrically neutral, if an atom has more or fewer electrons than protons, then it has an overall negative or positive charge, respectively, and it is called an ion. The electrons of an atom are attracted to the protons in a nucleus by this electromagnetic force. The number of protons in the nucleus defines to what chemical element the atom belongs, for example, the number of neutrons defines the isotope of the element. The number of influences the magnetic properties of an atom. Atoms can attach to one or more other atoms by chemical bonds to form compounds such as molecules. The ability of atoms to associate and dissociate is responsible for most of the changes observed in nature. The idea that matter is made up of units is a very old idea, appearing in many ancient cultures such as Greece. The word atom was coined by ancient Greek philosophers, however, these ideas were founded in philosophical and theological reasoning rather than evidence and experimentation. As a result, their views on what look like. They also could not convince everybody, so atomism was but one of a number of competing theories on the nature of matter. It was not until the 19th century that the idea was embraced and refined by scientists, in the early 1800s, John Dalton used the concept of atoms to explain why elements always react in ratios of small whole numbers
Atom
–
Scanning tunneling microscope image showing the individual atoms making up this
gold (
100) surface. The surface atoms deviate from the bulk
crystal structure and arrange in columns several atoms wide with pits between them (See
surface reconstruction).
Atom
–
Helium atom
24.
Trigonal planar
–
In chemistry, trigonal planar is a molecular geometry model with one atom at the center and three atoms at the corners of an equilateral triangle, called peripheral atoms, all in one plane. In an ideal trigonal planar species, all three ligands are identical and all angles are 120°. Such species belong to the point group D3h, molecules where the three ligands are not identical, such as H2CO, deviate from this idealized geometry. Examples of molecules with trigonal planar geometry include boron trifluoride, formaldehyde, phosgene, some ions with trigonal planar geometry include nitrate, carbonate, and guanidinium. In organic chemistry, planar, three-connected carbon centers that are trigonal planar are often described as having sp2 hybridization, nitrogen inversion is the distortion of pyramidal amines through a transition state that is trigonal planar. Pyramidalization is a distortion of this molecular shape towards a tetrahedral molecular geometry, one way to observe this distortion is in pyramidal alkenes
Trigonal planar
–
Idealized structure of a compound with trigonal planar coordination geometry.
25.
Isoelectronic
–
The species concerned are termed isoelectronic. This definition is sometimes termed valence isoelectronicity, in contrast with various alternatives, at one extreme these require identity of the total electron count and with it the entire electron configuration. More usually, alternatives are broader, and may extend to allowing different numbers of atoms in the species being compared, the importance of the concept lies in identifying significantly related species, as pairs or series. Isoelectronic species can be expected to show consistency and predictability in their properties. Electron-density calculations have been performed on many common substances, resulting in reaction predictions, identifying a new, rare or odd compound as isoelectronic with one already characterised offers clues to possible properties and reactions. The N atom and the O+ radical ion are isoelectronic because each has five electrons in the electronic shell. Similarly, the cations K+, Ca2+, and Sc3+ and the anions Cl−, S2−, in such monatomic cases, there is a clear trend in the sizes of such species, with atomic radius decreasing as charge increases. CO, CN−, N2 and NO+ are isoelectronic because each has two nuclei and 10 valence electrons, with each considered to have 5 of them. CO2, FCN, N2O, NO2+, N3−, and NCO− are all isoelectronic, isoelectronicity leads to the concept of hydrogen-like atoms, ions with one electron which are thus isoelectronic with hydrogen. The uncharged H 2C=C=O molecule and the zwitterionic H 2C=N+=N− molecule are isoelectronic, CH 3COCH3 and CH 3N 2CH3 are not isoelectronic. The amino acids tellurocysteine, selenocysteine, cysteine and serine are also considered isoelectronic
Isoelectronic
–
Selenocysteine
26.
Formal charge
–
In chemistry, a formal charge is the charge assigned to an atom in a molecule, assuming that electrons in all chemical bonds are shared equally between atoms, regardless of relative electronegativity. When determining the best Lewis structure for a molecule, the structure is such that the formal charge on each of the atoms is as close to zero as possible. Example, CO2 is a molecule with 16 total valence electrons. The following is equivalent, Draw a circle around the atom for which the charge is requested Count up the number of electrons in the atoms circle. Since the circle cuts the covalent bond in half, each covalent bond counts as one instead of two. Subtract the number of electrons in the circle from the number of the element to determine the formal charge. The formal charges computed for the atoms in this Lewis structure of carbon dioxide are shown below. It is important to keep in mind that formal charges are just that – formal, the formal charge system is just a method to keep track of all of the valence electrons that each atom brings with it when the molecule is formed. Formal charge is a tool for estimating the distribution of charge within a molecule. The concept of oxidation states constitutes a competing method to assess the distribution of electrons in molecules, with formal charge, the electrons in each covalent bond are assumed to be split exactly evenly between the two atoms in the bond. This can be most effectively visualized in an electrostatic potential map, with the oxidation state formalism, the electrons in the bonds are awarded to the atom with the greater electronegativity. In reality, the distribution of electrons in the molecule lies somewhere between two extremes
Formal charge
–
Formal charge in ozone and the nitrate anion
27.
Conjugate acid
–
A conjugate acid, within the Brønsted–Lowry acid–base theory, is a species formed by the reception of a proton by a base—in other words, it is a base with a hydrogen ion added to it. On the other hand, a base is merely what is left after an acid has donated a proton in a chemical reaction. Hence, a base is a species formed by the removal of a proton from an acid. A proton is a particle with a unit positive electrical charge, it is represented by the symbol H+ because it constitutes the nucleus of a hydrogen atom, that is. A cation can be an acid, and an anion can be a conjugate base, depending on which substance is involved. In an acid-base reaction, an acid plus a base reacts to form a conjugate base plus a conjugate acid, refer to the following figure, We say that the water molecule is the conjugate acid of the hydroxide ion after the latter received the hydrogen proton donated by ammonium. On the other hand, ammonia is the base for the acid ammonium after ammonium has donated a hydrogen ion towards the production of the water molecule. The strength of an acid is directly proportional to its dissociation constant. If a conjugate acid is strong, its dissociation will have an equilibrium constant. The strength of a base can be seen as the tendency of the species to pull hydrogen protons towards itself. If a conjugate base is classified as strong, it will hold on to the hydrogen proton when in solution, if a chemical species is classified as a weak acid, its conjugate base will be strong in nature. This can be observed in ammonias reaction with water, the reaction proceeds until most of the ammonia has been transformed to ammonium. This shift to the right in the equilibrium of the reaction means that ammonium does not dissociate easily in water. On the other hand, if a species is classified as a strong acid, an example of this case would be the dissociation of Hydrochloric acid HCl in water. Since HCl is an acid, its conjugate base will be a weak conjugate base. Therefore, in system, most H+ will be in the form of a Hydronium ion H 3O+ instead of attached to a Cl anion. To summarize, the stronger the acid or base, the weaker the conjugate, the acid and conjugate base as well as the base and conjugate acid are known as conjugate pairs. When finding a conjugate acid or base, it is important to look at the reactants of the chemical equation, to identify the conjugate acid, look for the pair of compounds that are related
Conjugate acid
–
Johannes Nicolaus Brønsted (left) and Martin Lowry (right).
Conjugate acid
–
Acids and
bases
Conjugate acid
28.
Chemical equilibrium
–
In a chemical reaction, chemical equilibrium is the state in which both reactants and products are present in concentrations which have no further tendency to change with time. Usually, this results when the forward reaction proceeds at the same rate as the reverse reaction. The reaction rates of the forward and backward reactions are not zero. Thus, there are no net changes in the concentrations of the reactant, such a state is known as dynamic equilibrium. The concept of chemical equilibrium was developed after Berthollet found that chemical reactions are reversible. For any reaction mixture to exist at equilibrium, the rates of the forward and backward reactions are equal, conversely the equilibrium position is said to be far to the left if hardly any product is formed from the reactants. Since at equilibrium forward and backward rates are equal, k + α β = k − σ τ, K c = k + k − = σ τ α β By convention the products form the numerator. Equality of forward and backward reaction rates, however, is a condition for chemical equilibrium. Adding a catalyst will affect both the reaction and the reverse reaction in the same way and will not have an effect on the equilibrium constant. The catalyst will speed up both reactions thereby increasing the speed at which equilibrium is reached, although the macroscopic equilibrium concentrations are constant in time, reactions do occur at the molecular level. This is an example of dynamic equilibrium, equilibria, like the rest of thermodynamics, are statistical phenomena, averages of microscopic behavior. Le Châteliers principle gives an idea of the behavior of a system when changes to its reaction conditions occur. If a dynamic equilibrium is disturbed by changing the conditions, the position of equilibrium moves to partially reverse the change. For example, adding more S from the outside will cause an excess of products, and this can also be deduced from the equilibrium constant expression for the reaction, K = If increases must increase and CH 3CO−2 must decrease. The H2O is left out, as it is the solvent and its concentration remains high, a quantitative version is given by the reaction quotient. J. W. Gibbs suggested in 1873 that equilibrium is attained when the Gibbs free energy of the system is at its minimum value, what this means is that the derivative of the Gibbs energy with respect to reaction coordinate vanishes, signalling a stationary point. This derivative is called the reaction Gibbs energy and corresponds to the difference between the chemical potentials of reactants and products at the composition of the reaction mixture and this criterion is both necessary and sufficient. If a mixture is not at equilibrium, the liberation of the excess Gibbs energy is the force for the composition of the mixture to change until equilibrium is reached
Chemical equilibrium
–
This article needs additional citations for
verification. Please help improve this article by
adding citations to reliable sources. Unsourced material may be challenged and removed. (March 2009)
29.
Cation
–
An ion is an atom or a molecule in which the total number of electrons is not equal to the total number of protons, giving the atom or molecule a net positive or negative electrical charge. Ions can be created, by chemical or physical means. In chemical terms, if an atom loses one or more electrons. If an atom gains electrons, it has a net charge and is known as an anion. Ions consisting of only a single atom are atomic or monatomic ions, because of their electric charges, cations and anions attract each other and readily form ionic compounds, such as salts. In the case of ionization of a medium, such as a gas, which are known as ion pairs are created by ion impact, and each pair consists of a free electron. The word ion comes from the Greek word ἰόν, ion, going and this term was introduced by English physicist and chemist Michael Faraday in 1834 for the then-unknown species that goes from one electrode to the other through an aqueous medium. Faraday also introduced the words anion for a charged ion. In Faradays nomenclature, cations were named because they were attracted to the cathode in a galvanic device, arrhenius explanation was that in forming a solution, the salt dissociates into Faradays ions. Arrhenius proposed that ions formed even in the absence of an electric current, ions in their gas-like state are highly reactive, and do not occur in large amounts on Earth, except in flames, lightning, electrical sparks, and other plasmas. These gas-like ions rapidly interact with ions of charge to give neutral molecules or ionic salts. These stabilized species are commonly found in the environment at low temperatures. A common example is the present in seawater, which are derived from the dissolved salts. Electrons, due to their mass and thus larger space-filling properties as matter waves, determine the size of atoms. Thus, anions are larger than the parent molecule or atom, as the excess electron repel each other, as such, in general, cations are smaller than the corresponding parent atom or molecule due to the smaller size of its electron cloud. One particular cation contains no electrons, and thus consists of a single proton - very much smaller than the parent hydrogen atom. Since the electric charge on a proton is equal in magnitude to the charge on an electron, an anion, from the Greek word ἄνω, meaning up, is an ion with more electrons than protons, giving it a net negative charge. A cation, from the Greek word κατά, meaning down, is an ion with fewer electrons than protons, there are additional names used for ions with multiple charges
Cation
30.
Ionic compound
–
In chemistry, an ionic compound is a chemical compound composed of ions held together by electrostatic forces termed ionic bonding. The compound is overall, but consists of positively charged ions called cations. These can be simple ions such as the sodium and chloride in sodium chloride, or polyatomic species such as the ammonium, Ionic compounds containing hydrogen ions are classified as acids, and those containing basic ions hydroxide or oxide are classified as bases. Ionic compounds without these ions are known as salts and can be formed by acid–base reactions. Ionic compounds typically have high melting and boiling points, and are hard, as solids they are almost always electrically insulating, but when melted or dissolved they become highly conductive, because the ions are mobilized. The word ion is the Greek ἰόν, ion, going and this term was introduced by English physicist and chemist Michael Faraday in 1834 for the then-unknown species that goes from one electrode to the other through an aqueous medium. In 1913 the crystal structure of sodium chloride was determined by William Henry Bragg, many other inorganic compounds were also found to have similar structural features. Principal contributors to the development of a treatment of ionic crystal structures were Max Born, Fritz Haber, Alfred Landé, Erwin Madelung, Paul Peter Ewald. Born predicted crystal energies based on the assumption of ionic constituents, Ionic compounds can be produced from their constituent ions by evaporation, precipitation, or freezing. Reactive metals such as the alkali metals can react directly with the highly electronegative halogen gases to form an ionic product and they can also be synthesized as the product of a high temperature reaction between solids. If the ionic compound is soluble in a solvent, it can be obtained as a compound by evaporating the solvent from this electrolyte solution. This process occurs widely in nature, and is the means of formation of the evaporite minerals, insoluble ionic compounds can be precipitated by mixing two solutions, one with the cation and one with the anion in it. Because all solutions are neutral, the two solutions mixed must also contain counterions of the opposite charges. To ensure that these do not contaminate the precipitated ionic compound, if the two solutions have hydrogen ions and hydroxide ions as the counterions, they will react with one another in what is called an acid–base reaction or a neutralization reaction to form water. Alternately the counterions can be chosen to ensure that even when combined into a solution they will remain soluble as spectator ions. Molten salts will solidify on cooling to below their freezing point and this is sometimes used for the solid-state synthesis of complex ionic compounds from solid reactants, which are first melted together. In other cases the solid reactants do not need to be melted, other synthetic routes use a solid precursor with the correct stoichiometric ratio of non-volatile ions, which is heated to drive off other species. There is also an additional attractive force from van der Waals interactions which contributes only around 1–2% of the cohesive energy for small ions
Ionic compound
–
X-ray spectrometer developed by Bragg
Ionic compound
–
The
crystal structure of
sodium chloride, NaCl, a typical ionic compound. The purple spheres represent
sodium cations, Na +, and the green spheres represent
chloride anions, Cl −.
Ionic compound
–
Halite, the mineral form of
sodium chloride, forms when salty water evaporates leaving the ions behind.
Ionic compound
–
Anhydrous cobalt(II) chloride CoCl 2
