1.
Life
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Various forms of life exist, such as plants, animals, fungi, protists, archaea, and bacteria. The criteria can at times be ambiguous and may or may not define viruses, viroids, biology is the primary science concerned with the study of life, although many other sciences are involved. The definition of life is controversial, the current definition is that organisms maintain homeostasis, are composed of cells, undergo metabolism, can grow, adapt to their environment, respond to stimuli, and reproduce. However, many other definitions have been proposed, and there are some borderline cases. Modern definitions are more complex, with input from a diversity of scientific disciplines, biophysicists have proposed many definitions based on chemical systems, there are also some living systems theories, such as the Gaia hypothesis, the idea that the Earth itself is alive. Another theory is that life is the property of systems, and yet another is elaborated in complex systems biology. Abiogenesis describes the process of life arising from non-living matter. Properties common to all organisms include the need for certain chemical elements to sustain biochemical functions. Life on Earth first appeared as early as 4.28 billion years ago, soon after ocean formation 4.41 billion years ago, Earths current life may have descended from an RNA world, although RNA-based life may not have been the first. The mechanism by which began on Earth is unknown, though many hypotheses have been formulated and are often based on the Miller–Urey experiment. The earliest known forms are microfossils of bacteria. In July 2016, scientists reported identifying a set of 355 genes believed to be present in the last universal ancestor of all living organisms. Since its primordial beginnings, life on Earth has changed its environment on a time scale. To survive in most ecosystems, life must often adapt to a range of conditions. Some microorganisms, called extremophiles, thrive in physically or geochemically extreme environments that are detrimental to most other life on Earth, Aristotle was the first person to classify organisms. Later, Carl Linnaeus introduced his system of nomenclature for the classification of species. Eventually new groups and categories of life were discovered, such as cells and microorganisms, cells are sometimes considered the smallest units and building blocks of life. There are two kinds of cells, prokaryotic and eukaryotic, both of which consist of cytoplasm enclosed within a membrane and contain many such as proteins
2.
Domain (biology)
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In biological taxonomy, a domain is the highest taxonomic rank of organisms in the three-domain system of taxonomy designed by Carl Woese, an American microbiologist and biophysicist. According to the Woese system, introduced in 1990, the tree of life consists of three domains, Archaea, Bacteria, and Eukarya, the first two are all prokaryotic microorganisms, or single-celled organisms whose cells have no nucleus. All life that has a nucleus and membrane-bound organelles, and multicellular organisms, is included in the Eukarya, stefan Luketa in 2012 proposed the five-domain system of life with both cellular and non-cellular organisms. The term domain is proposed by Woese et al. in his three-domain system and this term represents a synonym for the category of dominion, introduced by Moore in 1974. However, only S. Luketa uses the term dominion, each of these three domains of life recognized by biologists today contain unique rRNA. This fact in itself forms the basis of the three-domain system, Archaea are prokaryotic cells, typically characterized by membrane lipids that are branched hydrocarbon chains attached to glycerol by ether linkages. The presence of ether linkages in Archaea adds to their ability to withstand extreme temperatures and highly acidic conditions. Halophiles, organisms that thrive in salty environments, and hyperthermophiles. Archaea evolved many cell sizes, but all are relatively small and their size ranges from 0.1 to 15 μ diameter and up to 200 μ long. They are about the size of bacteria or similar to the size of a mitochondrion in a eukaryotic cell, members of the genus Thermoplasma are the smallest of the archaea. Even though bacteria are prokaryotic cells just like Archaea, their membranes are made of unbranched fatty acid chains attached to glycerol by ester linkages, cyanobacteria and mycoplasmas are two examples of bacteria. They characteristically do not have ether linkages like Archaea, and they are grouped into a different category—and hence a different domain. There is a deal of diversity in this domain. Members of the domain Eukarya have membrane-bound organelles and are represented by four kingdoms, Plantae, Protista, Animalia, none of the three systems currently include non-cellular life. As of 2011 there is talk about Nucleocytoplasmic large DNA viruses possibly being a branch domain of life. Stefan Luketa in 2012 proposed a system, adding Prionobiota and Virusobiota to the traditional three domains. Alternative classifications of life so far proposed include, The two-empire system or superdomain system, the eocyte hypothesis, first proposed by James A. Lake et al. in 1984, which posits two domains
3.
Kingdom (biology)
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In biology, kingdom is the second highest taxonomic rank below domain. Kingdoms are divided into groups called phyla. Traditionally, textbooks from the United States used a system of six kingdoms while textbooks in Great Britain, India, Australia, Latin America and other countries used five kingdoms. Later two further main ranks were introduced, making the kingdom, phylum or division, class, order, family, genus. In the 1960s a rank was introduced above kingdom, namely domain, prefixes can be added so subkingdom and infrakingdom are the two ranks immediately below kingdom. Superkingdom may be considered as an equivalent of domain or empire or as an independent rank between kingdom and domain or subdomain, in some classification systems the additional rank branch can be inserted between subkingdom and infrakingdom. Taxonomic ranks, including kingdoms, were to be groups of organisms with a common ancestor, based on such RNA studies, Carl Woese thought life could be divided into three large divisions and referred to them as the three primary kingdom model or urkingdom model. In 1990, the domain was proposed for the highest rank. This term represents a synonym for the category of dominion, introduced by Moore in 1974, unlike Moore, Whoese et al. did not suggest a Latin term for this category, which represents a further argument supporting the accurately introduced term dominion. It was also found that the eukaryotes are more related to the Archaea than they are to the Eubacteria. Although the primacy of the Eubacteria-Archaea divide has been questioned, it has been upheld by subsequent research, there is no consensus on how many kingdoms exist in the classification scheme proposed by Woese. In 2004, a article by Simpson and Roger noted that the Protista were a grab-bag for all eukaryotes that are not animals. On this basis, the diagram opposite showed the real kingdoms of the eukaryotes, a classification which followed this approach was produced in 2005 for the International Society of Protistologists, by a committee which worked in collaboration with specialists from many societies. It divided the eukaryotes into the same six supergroups, the published classification deliberately did not use formal taxonomic ranks, including that of kingdom. In this system the multicellular animals are descended from the same ancestor as both the unicellular choanoflagellates and the fungi which form the Opisthokonta, Plants are thought to be more distantly related to animals and fungi. Beyond this, there does not appear to be a consensus, rogozin et al. in 2009 noted that The deep phylogeny of eukaryotes is an extremely difficult and controversial problem. The classification of living things into animals and plants is an ancient one, aristotle classified animal species in his History of Animals, while his pupil Theophrastus wrote a parallel work, the Historia Plantarum, on plants. Carl Linnaeus laid the foundations for biological nomenclature, now regulated by the Nomenclature Codes
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Phylum
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In biology, a phylum is a taxonomic rank below kingdom and above class. Traditionally, in botany the term division was used instead of phylum, although from 1993 the International Code of Nomenclature for algae, fungi, depending on definitions, the kingdom Animalia contains approximately 35 phyla, Plantae contains about 12, and Fungi contains around 7. Current research in phylogenetics is uncovering the relationships between phyla, which are contained in larger clades, like Ecdysozoa and Embryophyta, the definitions of zoological phyla have changed from their origins in the six Linnaean classes and the four embranchements of Georges Cuvier. Haeckel introduced the term phylum, based on the Greek word phylon, in plant taxonomy, Eichler classified plants into five groups, named divisions. Informally, phyla can be thought of as grouping organisms based on general specialization of body plan, the most important objective measure in the above definitions is the certain degree—how unrelated do organisms need to be to be members of different phyla. The minimal requirement is that all organisms in a phylum should be more closely related to one another than to any other group. So phyla can be merged or split if it becomes apparent that they are related to one another or not, a definition of a phylum based on body plan has been proposed by paleontologists Graham Budd and Sören Jensen. By Budd and Jensens definition, a phylum is defined by a set of shared by all its living representatives. This approach brings some small problems—for instance, ancestral characters common to most members of a phylum may have been lost by some members, also, this definition is based on an arbitrary point of time, the present. However, as it is based, it is easy to apply to the fossil record. A greater problem is that it relies on a decision about which groups of organisms should be considered as phyla. However, proving that a fossil belongs to the group of a phylum is difficult. Furthermore, organisms in the group of a phylum can possess the body plan of the phylum without all the characteristics necessary to fall within it. This weakens the idea that each of the phyla represents a body plan. A classification using this definition may be affected by the chance survival of rare groups. Representatives of many modern phyla did not appear until long after the Cambrian, the kingdom Plantae is defined in various ways by different biologists. All definitions include the living embryophytes, to which may be added the two green algae divisions, Chlorophyta and Charophyta, to form the clade Viridiplantae. The table below follows the influential Cavalier-Smith system in equating Plantae with Archaeplastida, a group containing Viridiplantae, the definition and classification of plants at the division level also varies from source to source, and has changed progressively in recent years
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Class (biology)
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In biological classification, class is, a taxonomic rank. Other well-known ranks in descending order of size are life, domain, kingdom, phylum, order, family, genus, as for the other well-known ranks, there is the option of an immediately lower rank, indicated by the prefix sub-, subclass. A taxonomic unit, a taxon, in that rank, in that case the plural is classes The composition of each class is determined by a taxonomist. Often there is no agreement, with different taxonomists taking different positions. There are no rules that a taxonomist needs to follow in describing a class. For example, dogs are assigned to the phylum Chordata, in the class Mammalia. In botany, classes are now rarely discussed, for some clades, a number of alternative classifications are used. In the first edition of his Systema Naturae, carl Linnaeus divided all three of his kingdoms of Nature into classes. The class was considered the highest level of the hierarchy until George Cuviers embranchements. Cladistics List of animal classes Phylogenetics Systematics Taxonomy
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Order (biology)
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In biological classification, the order is a taxonomic rank used in the classification of organisms and recognized by the nomenclature codes. Other well-known ranks are life, domain, kingdom, phylum, class, family, genus, an immediately higher rank, superorder, may be added directly above order, while suborder would be a lower rank. A taxonomic unit, a taxon, in that rank, in that case the plural is orders. Example, The Juglans and Hickory trees belong to the family Juglandaceae, what does and does not belong to each order is determined by a taxonomist, as is whether a particular order should be recognized at all. Often there is no agreement, with different taxonomists each taking a different position. There are no rules that a taxonomist needs to follow in describing or recognizing an order. Some taxa are accepted almost universally, while others are recognised only rarely, for some groups of organisms, consistent suffixes are used to denote that the rank is an order. The Latin suffix -formes meaning having the form of is used for the name of orders of birds and fishes. The suffix -ales is for the name of orders of plants, fungi, for some clades covered by the International Code of Zoological Nomenclature, a number of additional classifications are sometimes used, although not all of these are officially recognised. In their 1997 classification of mammals, McKenna and Bell used two levels between superorder and order, grandorder and mirorder. Michael Novacek inserted them at the same position, michael Benton inserted them between superorder and magnorder instead. This position was adopted by Systema Naturae 2000 and others, in botany, the ranks of subclass and suborder are secondary ranks pre-defined as respectively above and below the rank of order. Any number of further ranks can be used as long as they are clearly defined, the superorder rank is commonly used, with the ending -anae that was initiated by Armen Takhtajans publications from 1966 onwards. Carl Linnaeus was the first to apply it consistently to the division of all three kingdoms of nature in his Systema Naturae, for plants, Linnaeus orders in the Systema Naturae and the Species Plantarum were strictly artificial, introduced to subdivide the artificial classes into more comprehensible smaller groups. In French botanical publications, from Michel Adansons Familles naturelles des plantes and until the end of the 19th century, some of the plant families still retain the names of Linnaean natural orders or even the names of pre-Linnaean natural groups recognised by Linnaeus as orders in his natural classification. Such names are known as family names. In zoology, the Linnaean orders were used more consistently and that is, the orders in the zoology part of the Systema Naturae refer to natural groups. Some of his names are still in use
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Family (biology)
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In biological classification, family is one of the eight major taxonomic ranks, it is classified between order and genus. A family may be divided into subfamilies, which are intermediate ranks above the rank of genus. In vernacular usage, a family may be named one of its common members, for example, walnuts and hickory trees belong to the family Juglandaceae. What does or does not belong to a family—or whether a family should be recognized at all—are proposed and determined by practicing taxonomists. There are no rules for describing or recognizing a family. Taxonomists often take different positions about descriptions of taxa, and there may be no broad consensus across the community for some time. Some described taxa are accepted broadly and quickly, but others only rarely, if at all, the naming of families is codified by various international codes. In zoological nomenclature, the names of animals end with the suffix -idae. The concept of rank at time was not yet settled, and in the preface to the Prodromus Magnol spoke of uniting his families into larger genera. Carolus Linnaeus used the word familia in his Philosophia botanica to denote groups of plants, trees, herbs, ferns, palms. He used this term only in the section of the book. In zoology, the family as an intermediate between order and genus was introduced by Pierre André Latreille in his Précis des caractères génériques des insectes. He used families in some but not in all his orders of insects, families can be used for evolutionary, palaeontological and generic studies because they are more stable than lower taxonomic levels such as genera and species
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Genus
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A genus is a taxonomic rank used in the biological classification of living and fossil organisms in biology. In the hierarchy of classification, genus comes above species. In binomial nomenclature, the name forms the first part of the binomial species name for each species within the genus. Felis catus and Felis silvestris are two species within the genus Felis, Felis is a genus within the family Felidae. The composition of a genus is determined by a taxonomist, the standards for genus classification are not strictly codified, so different authorities often produce different classifications for genera. Moreover, genera should be composed of units of the same kind as other genera. The term comes from the Latin genus, a noun form cognate with gignere, linnaeus popularized its use in his 1753 Species Plantarum, but the French botanist Joseph Pitton de Tournefort is considered the founder of the modern concept of genera. The scientific name of a genus may be called the name or generic epithet. It plays a role in binomial nomenclature, the system of naming organisms. The rules for the names of organisms are laid down in the Nomenclature Codes. The standard way of scientifically describing species and other lower-ranked taxa is by binomial nomenclature, the generic name forms its first half. For example, the gray wolfs binomial name is Canis lupus, with Canis being the name shared by the wolfs close relatives. The specific name is written in lower-case and may be followed by names in zoology or a variety of infraspecific names in botany. Especially with these names, when the generic name is known from context. Because animals are typically only grouped within subspecies, it is written as a trinomen with a third name. Dog breeds, meanwhile, are not scientifically distinguished, there are several divisions of plant species and therefore their infraspecific names generally include contractions explaining the relation. For example, the genus Hibiscus includes hundreds of other species apart from the Rose of Sharon or common garden hibiscus, Rose of Sharon doesnt have subspecies but has cultivars that carry desired traits, such as the bright white H. syriaca Diana. Hawaiian hibiscus, meanwhile, includes several separate species, since not all botanists agree on the divisions or names between species, it is common to specify the source of the name using author abbreviations
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Species
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In biology, a species is the basic unit of biological classification and a taxonomic rank. A species is defined as the largest group of organisms in which two individuals can produce fertile offspring, typically by sexual reproduction. While this definition is often adequate, looked at more closely it is problematic, for example, with hybridisation, in a species complex of hundreds of similar microspecies, or in a ring species, the boundaries between closely related species become unclear. Other ways of defining species include similarity of DNA, morphology, all species are given a two-part name, a binomial. The first part of a binomial is the genus to which the species belongs, the second part is called the specific name or the specific epithet. For example, Boa constrictor is one of four species of the Boa genus, Species were seen from the time of Aristotle until the 18th century as fixed kinds that could be arranged in a hierarchy, the great chain of being. In the 19th century, biologists grasped that species could evolve given sufficient time, Charles Darwins 1859 book The Origin of Species explained how species could arise by natural selection. Genes can sometimes be exchanged between species by horizontal transfer, and species may become extinct for a variety of reasons. In his biology, Aristotle used the term γένος to mean a kind, such as a bird or fish, a kind was distinguished by its attributes, for instance, a bird has feathers, a beak, wings, a hard-shelled egg, and warm blood. A form was distinguished by being shared by all its members, Aristotle believed all kinds and forms to be distinct and unchanging. His approach remained influential until the Renaissance, when observers in the Early Modern period began to develop systems of organization for living things, they placed each kind of animal or plant into a context. Many of these early delineation schemes would now be considered whimsical, animals likewise that differ specifically preserve their distinct species permanently, one species never springs from the seed of another nor vice versa. In the 18th century, the Swedish scientist Carl Linnaeus classified organisms according to shared physical characteristics and he established the idea of a taxonomic hierarchy of classification based upon observable characteristics and intended to reflect natural relationships. At the time, however, it was widely believed that there was no organic connection between species, no matter how similar they appeared. However, whether or not it was supposed to be fixed, by the 19th century, naturalists understood that species could change form over time, and that the history of the planet provided enough time for major changes. Jean-Baptiste Lamarck, in his 1809 Zoological Philosophy, described the transmutation of species, proposing that a species could change over time, in 1859, Charles Darwin and Alfred Russel Wallace provided a compelling account of evolution and the formation of new species. Darwin argued that it was populations that evolved, not individuals and this required a new definition of species. Darwin concluded that species are what appear to be, ideas
