In biology, a type is a particular specimen of an organism to which the scientific name of that organism is formally attached. In other words, a type is an example that serves to anchor or centralize the defining features of that particular taxon. In older usage, a type was a taxon rather than a specimen. A taxon is a scientifically named grouping of organisms with other like organisms, a set that includes some organisms and excludes others, based on a detailed published description and on the provision of type material, available to scientists for examination in a major museum research collection, or similar institution. According to a precise set of rules laid down in the International Code of Zoological Nomenclature and the International Code of Nomenclature for algae and plants, the scientific name of every taxon is always based on one particular specimen, or in some cases specimens. Types are of great significance to biologists to taxonomists. Types are physical specimens that are kept in a museum or herbarium research collection, but failing that, an image of an individual of that taxon has sometimes been designated as a type.
Describing species and appointing type specimens is part of scientific nomenclature and alpha taxonomy. When identifying material, a scientist attempts to apply a taxon name to a specimen or group of specimens based on his or her understanding of the relevant taxa, based on having read the type description, preferably based on an examination of all the type material of all of the relevant taxa. If there is more than one named type that all appear to be the same taxon the oldest name takes precedence, is considered to be the correct name of the material in hand. If on the other hand the taxon appears never to have been named at all the scientist or another qualified expert picks a type specimen and publishes a new name and an official description; this process is crucial to the science of biological taxonomy. People's ideas of how living things should be grouped shift over time. How do we know that what we call "Canis lupus" is the same thing, or the same thing, as what they will be calling "Canis lupus" in 200 years' time?
It is possible to check this because there is a particular wolf specimen preserved in Sweden and everyone who uses that name – no matter what else they may mean by it – will include that particular specimen. Depending on the nomenclature code applied to the organism in question, a type can be a specimen, a culture, an illustration, or a description; some codes consider a subordinate taxon to be the type, but under the botanical code the type is always a specimen or illustration. For example, in the research collection of the Natural History Museum in London, there is a bird specimen numbered 18184.108.40.206. This is a specimen of a kind of bird known as the spotted harrier, which bears the scientific name Circus assimilis; this particular specimen is the holotype for that species. That species was named and described by Jardine and Selby in 1828, the holotype was placed in the museum collection so that other scientists might refer to it as necessary. Note that at least for type specimens there is no requirement for a "typical" individual to be used.
Genera and families those established by early taxonomists, tend to be named after species that are more "typical" for them, but here too this is not always the case and due to changes in systematics cannot be. Hence, the term name-bearing type or onomatophore is sometimes used, to denote the fact that biological types do not define "typical" individuals or taxa, but rather fix a scientific name to a specific operational taxonomic unit. Type specimens are theoretically allowed to be aberrant or deformed individuals or color variations, though this is chosen to be the case, as it makes it hard to determine to which population the individual belonged; the usage of the term type is somewhat complicated by different uses in botany and zoology. In the PhyloCode, type-based definitions are replaced by phylogenetic definitions. In some older taxonomic works the word "type" has sometimes been used differently; the meaning was similar in the first Laws of Botanical Nomenclature, but has a meaning closer to the term taxon in some other works: Ce seul caractère permet de distinguer ce type de toutes les autres espèces de la section.
… Après avoir étudié ces diverses formes, j'en arrivai à les considérer comme appartenant à un seul et même type spécifique. Translation: This single character permits distinguish this type from all other species of the section... After studying the diverse forms, I came to consider them as belonging to the one and the same specific type. In botanical nomenclature, a type, "is that element to which the name of a taxon is permanently attached." In botany a type is either an illustration. A specimen is a real plant and kept safe, "curated", in a herbarium. Examples of where an illustration may serve as a type include: A detailed drawing, etc. depicting the plant, from the early days of plant taxonomy. A dried plant was difficult to transport and hard to keep safe for the future. Skilled botanical artists were sometimes employed by a botanist to make a faithful and detailed illustration; some such illustrations have become the best record a
Tardigrades are a phylum of water-dwelling, eight-legged, segmented micro-animals. They were first described by the German zoologist Johann August Ephraim Goeze in 1773, who gave them the name of "little water bears"; the name Tardigrada was given in 1777 by the Italian biologist Lazzaro Spallanzani. They have been found everywhere: from mountaintops to mud volcanoes. Tardigrades are among the most resilient known animals, with individual species able to survive extreme conditions that would be fatal to nearly all other known life forms, such as exposure to extreme temperatures, extreme pressures, air deprivation, radiation and starvation. Tardigrades have survived exposure to outer space. About 1,150 known species form a part of the superphylum Ecdysozoa; the group includes fossils dating from 530 million years ago, in the Cambrian period. Tardigrades are about 0.5 mm long when they are grown. They are plump, with four pairs of legs, each ending in claws or sucking disks. Tardigrades are prevalent in mosses and lichens and feed on plant cells and small invertebrates.
When collected, they may be viewed under a low-power microscope, making them accessible to students and amateur scientists. Johann August Ephraim Goeze named the tardigrade kleiner Wasserbär, meaning "little water bear" in German; the name Tardigradum means "slow walker" and was given by Lazzaro Spallanzani in 1776. The name "water bear" comes from the way they reminiscent of a bear's gait; the biggest adults may reach a body length of the smallest below 0.1 mm. Newly hatched tardigrades may be smaller than 0.05 mm. Tardigrades are found on lichens and mosses. Other environments are dunes, beaches and marine or freshwater sediments, where they may occur quite frequently. Tardigrades, in the case of Echiniscoides wyethi, may be found on barnacles. Tardigrades can be found by soaking a piece of moss in water. Tardigrades have barrel-shaped bodies with four pairs of stubby legs. Most range from 0.3 to 0.5 mm in length. The body consists of a head, three body segments each with a pair of legs, a caudal segment with a fourth pair of legs.
The legs are without joints. The cuticle is moulted periodically; the first three pairs of legs are directed downward along the sides, are the primary means of locomotion, while the fourth pair is directed backward on the last segment of the trunk and is used for grasping the substrate. Tardigrades lack a large intermediate region of the body axis. In insects, this corresponds to the abdomen; the whole body, except for the last pair of legs, is made up of just the segments that are homologous to the head region in arthropods. All adult tardigrades of the same species have the same quantity of cells; some species have as many as 40,000 cells in each adult. The body cavity consists of a haemocoel, but the only place where a true coelom can be found is around the gonad. No respiratory organs are found, with gas exchange able to occur across the entirety of the body; some tardigrades have three tubular glands associated with the rectum. Nephridia are absent; the tubular mouth is armed with stylets, which are used to pierce the plant cells, algae, or small invertebrates on which the tardigrades feed, releasing the body fluids or cell contents.
The mouth opens into a triradiate, sucking pharynx. The stylets are lost when the animal molts, a new pair is secreted from a pair of glands that lie on either side of the mouth; the pharynx connects to a short esophagus, to an intestine that occupies much of the length of the body, the main site of digestion. The intestine opens, to an anus located at the terminal end of the body; some species only defecate. The brain develops in a bilaterally symmetric pattern; the brain includes multiple lobes consisting of three bilaterally paired clusters of neurons. The brain is attached to a large ganglion below the esophagus, from which a double ventral nerve cord runs the length of the body; the cord possesses one ganglion per segment, each of which produces lateral nerve fibres that run into the limbs. Many species possess a pair of rhabdomeric pigment-cup eyes, numerous sensory bristles are on the head and body. Tardigrades all possess a buccopharyngeal apparatus which, along with the claws, is used to differentiate among species.
Although some species are parthenogenic, both males and females are present, each with a single gonad located above the intestine. Two ducts run from the testes in males. In contrast, females have a single duct opening either just above the anus or directly into the rectum, which thus forms a cloaca. Tardigrades are oviparous, fertilization is external. Mating occurs during the molt with the eggs being laid inside the shed cuticle of the female and covered with sperm. A
In biology, a species is the basic unit of classification and a taxonomic rank of an organism, as well as a unit of biodiversity. A species is defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring by sexual reproduction. Other ways of defining species include their karyotype, DNA sequence, behaviour or ecological niche. In addition, paleontologists use the concept of the chronospecies since fossil reproduction cannot be examined. While these definitions may seem adequate, when looked at more they represent problematic species concepts. For example, the boundaries between related species become unclear with hybridisation, in a species complex of hundreds of similar microspecies, in a ring species. Among organisms that reproduce only asexually, the concept of a reproductive species breaks down, each clone is a microspecies. All species are given a two-part name, a "binomial"; the first part of a binomial is the genus.
The second part is called the specific epithet. For example, Boa constrictor is one of four species of the genus Boa. None of these is satisfactory definitions, but scientists and conservationists need a species definition which allows them to work, regardless of the theoretical difficulties. If species were fixed and distinct from one another, there would be no problem, but evolutionary processes cause species to change continually, to grade into one another. Species were seen from the time of Aristotle until the 18th century as fixed kinds that could be arranged in a hierarchy, the great chain of being. In the 19th century, biologists grasped. Charles Darwin's 1859 book The Origin of Species explained how species could arise by natural selection; that understanding was extended in the 20th century through genetics and population ecology. Genetic variability arises from mutations and recombination, while organisms themselves are mobile, leading to geographical isolation and genetic drift with varying selection pressures.
Genes can sometimes be exchanged between species by horizontal gene transfer. Viruses are a special case, driven by a balance of mutation and selection, can be treated as quasispecies. Biologists and taxonomists have made many attempts to define species, beginning from morphology and moving towards genetics. Early taxonomists such as Linnaeus had no option but to describe what they saw: this was formalised as the typological or morphological species concept. Ernst Mayr emphasised reproductive isolation, but this, like other species concepts, is hard or impossible to test. Biologists have tried to refine Mayr's definition with the recognition and cohesion concepts, among others. Many of the concepts are quite similar or overlap, so they are not easy to count: the biologist R. L. Mayden recorded about 24 concepts, the philosopher of science John Wilkins counted 26. Wilkins further grouped the species concepts into seven basic kinds of concepts: agamospecies for asexual organisms biospecies for reproductively isolated sexual organisms ecospecies based on ecological niches evolutionary species based on lineage genetic species based on gene pool morphospecies based on form or phenotype and taxonomic species, a species as determined by a taxonomist.
A typological species is a group of organisms in which individuals conform to certain fixed properties, so that pre-literate people recognise the same taxon as do modern taxonomists. The clusters of variations or phenotypes within specimens would differentiate the species; this method was used as a "classical" method of determining species, such as with Linnaeus early in evolutionary theory. However, different phenotypes are not different species. Species named in this manner are called morphospecies. In the 1970s, Robert R. Sokal, Theodore J. Crovello and Peter Sneath proposed a variation on this, a phenetic species, defined as a set of organisms with a similar phenotype to each other, but a different phenotype from other sets of organisms, it differs from the morphological species concept in including a numerical measure of distance or similarity to cluster entities based on multivariate comparisons of a reasonably large number of phenotypic traits. A mate-recognition species is a group of sexually reproducing organisms that recognize one another as potential mates.
Expanding on this to allow for post-mating isolation, a cohesion species is the most inclusive population of individuals having the potential for phenotypic cohesion through intrinsic cohesion mechanisms. A further development of the recognition concept is provided by the biosemiotic concept of species. In microbiology, genes can move even between distantly related bacteria extending to the whole bacterial domain; as a rule of thumb, microbiologists have assumed that kinds of Bacteria or Archaea with 16S ribosomal RNA gene sequences more similar than 97% to each other need to be checked by DNA-DNA hybridisation to decide if they belong to the same species or not. This concept was narrowed in 2006 to a similarity of 98.7%. DNA-DNA hybri
Binomial nomenclature called binominal nomenclature or binary nomenclature, is a formal system of naming species of living things by giving each a name composed of two parts, both of which use Latin grammatical forms, although they can be based on words from other languages. Such a name is called a binomen, binominal name or a scientific name; the first part of the name – the generic name – identifies the genus to which the species belongs, while the second part – the specific name or specific epithet – identifies the species within the genus. For example, humans belong within this genus to the species Homo sapiens. Tyrannosaurus rex is the most known binomial; the formal introduction of this system of naming species is credited to Carl Linnaeus beginning with his work Species Plantarum in 1753. But Gaspard Bauhin, in as early as 1623, had introduced in his book Pinax theatri botanici many names of genera that were adopted by Linnaeus; the application of binomial nomenclature is now governed by various internationally agreed codes of rules, of which the two most important are the International Code of Zoological Nomenclature for animals and the International Code of Nomenclature for algae and plants.
Although the general principles underlying binomial nomenclature are common to these two codes, there are some differences, both in the terminology they use and in their precise rules. In modern usage, the first letter of the first part of the name, the genus, is always capitalized in writing, while that of the second part is not when derived from a proper noun such as the name of a person or place. Both parts are italicized when a binomial name occurs in normal text, thus the binomial name of the annual phlox is now written as Phlox drummondii. In scientific works, the authority for a binomial name is given, at least when it is first mentioned, the date of publication may be specified. In zoology "Patella vulgata Linnaeus, 1758"; the name "Linnaeus" tells the reader who it was that first published a description and name for this species of limpet. "Passer domesticus". The original name given by Linnaeus was Fringilla domestica; the ICZN does not require that the name of the person who changed the genus be given, nor the date on which the change was made, although nomenclatorial catalogs include such information.
In botany "Amaranthus retroflexus L." – "L." is the standard abbreviation used in botany for "Linnaeus". "Hyacinthoides italica Rothm. – Linnaeus first named this bluebell species Scilla italica. The name is composed of two word-forming elements: "bi", a Latin prefix for two, "-nomial", relating to a term or terms; the word "binomium" was used in Medieval Latin to mean a two-term expression in mathematics. Prior to the adoption of the modern binomial system of naming species, a scientific name consisted of a generic name combined with a specific name, from one to several words long. Together they formed a system of polynomial nomenclature; these names had two separate functions. First, to designate or label the species, second, to be a diagnosis or description. In a simple genus, containing only two species, it was easy to tell them apart with a one-word genus and a one-word specific name; such "polynomial names" may sometimes look like binomials, but are different. For example, Gerard's herbal describes various kinds of spiderwort: "The first is called Phalangium ramosum, Branched Spiderwort.
The other... is aptly termed Phalangium Ephemerum Virginianum, Soon-Fading Spiderwort of Virginia". The Latin phrases are short descriptions, rather than identifying labels; the Bauhins, in particular Caspar Bauhin, took some important steps towards the binomial system, by pruning the Latin descriptions, in many cases to two words. The adoption by biologists of a system of binomial nomenclature is due to Swedish botanist and physician Carl von Linné, more known by his Latinized name Carl Linnaeus, it was in his 1753 Species Plantarum that he first began using a one-word "trivial name" together with a generic name in a system of binomial nomenclature. This trivial name is what is now known as specific name; the Bauhins' genus names were retained in many of these, but the descriptive part was reduced to a single word. Linnaeus's trivial names introduced an important new idea, namely that the function of a name could be to give a species a unique label; this meant. Thus Gerard's Phalangium ephemerum virginianum became Tradescantia virgi
Wikispecies is a wiki-based online project supported by the Wikimedia Foundation. Its aim is to create a comprehensive free content catalogue of all species. Jimmy Wales stated that editors are not required to fax in their degrees, but that submissions will have to pass muster with a technical audience. Wikispecies is available under the GNU Free Documentation License and CC BY-SA 3.0. Started in September 2004, with biologists across the world invited to contribute, the project had grown a framework encompassing the Linnaean taxonomy with links to Wikipedia articles on individual species by April 2005. Benedikt Mandl co-ordinated the efforts of several people who are interested in getting involved with the project and contacted potential supporters in early summer 2004. Databases were evaluated and the administrators contacted, some of them have agreed on providing their data for Wikispecies. Mandl defined two major tasks: Figure out how the contents of the data base would need to be presented—by asking experts, potential non-professional users and comparing that with existing databases Figure out how to do the software, which hardware is required and how to cover the costs—by asking experts, looking for fellow volunteers and potential sponsorsAdvantages and disadvantages were discussed by the wikimedia-I mailing list.
The board of directors of the Wikimedia Foundation voted by 4 to 0 in favor of the establishment of a Wikispecies. The project is hosted at species.wikimedia.org. It was merged to a sister project of Wikimedia Foundation on September 14, 2004. On October 10, 2006, the project exceeded 75,000 articles. On May 20, 2007, the project exceeded 100,000 articles with a total of 5,495 registered users. On September 8, 2008, the project exceeded 150,000 articles with a total of 9,224 registered users. On October 23, 2011, the project reached 300,000 articles. On June 16, 2014, the project reached 400,000 articles. On January 7, 2017, the project reached 500,000 articles. On October 30, 2018, the project reached 600,000 articles, a total of 1.12 million pages. Wikispecies comprises taxon pages, additionally pages about synonyms, taxon authorities, taxonomical publications, institutions or repositories holding type specimen. Wikispecies asks users to use images from Wikimedia Commons. Wikispecies does not allow the use of content.
All Species Foundation Catalogue of Life Encyclopedia of Life Tree of Life Web Project List of online encyclopedias The Plant List Wikispecies, The free species directory that anyone can edit Species Community Portal The Wikispecies Charter, written by Wales
Animals are multicellular eukaryotic organisms that form the biological kingdom Animalia. With few exceptions, animals consume organic material, breathe oxygen, are able to move, can reproduce sexually, grow from a hollow sphere of cells, the blastula, during embryonic development. Over 1.5 million living animal species have been described—of which around 1 million are insects—but it has been estimated there are over 7 million animal species in total. Animals range in length from 8.5 millionths of a metre to 33.6 metres and have complex interactions with each other and their environments, forming intricate food webs. The category includes humans, but in colloquial use the term animal refers only to non-human animals; the study of non-human animals is known as zoology. Most living animal species are in the Bilateria, a clade whose members have a bilaterally symmetric body plan; the Bilateria include the protostomes—in which many groups of invertebrates are found, such as nematodes and molluscs—and the deuterostomes, containing the echinoderms and chordates.
Life forms interpreted. Many modern animal phyla became established in the fossil record as marine species during the Cambrian explosion which began around 542 million years ago. 6,331 groups of genes common to all living animals have been identified. Aristotle divided animals into those with those without. Carl Linnaeus created the first hierarchical biological classification for animals in 1758 with his Systema Naturae, which Jean-Baptiste Lamarck expanded into 14 phyla by 1809. In 1874, Ernst Haeckel divided the animal kingdom into the multicellular Metazoa and the Protozoa, single-celled organisms no longer considered animals. In modern times, the biological classification of animals relies on advanced techniques, such as molecular phylogenetics, which are effective at demonstrating the evolutionary relationships between animal taxa. Humans make use of many other animal species for food, including meat and eggs. Dogs have been used in hunting, while many aquatic animals are hunted for sport.
Non-human animals have appeared in art from the earliest times and are featured in mythology and religion. The word "animal" comes from the Latin animalis, having soul or living being; the biological definition includes all members of the kingdom Animalia. In colloquial usage, as a consequence of anthropocentrism, the term animal is sometimes used nonscientifically to refer only to non-human animals. Animals have several characteristics. Animals are eukaryotic and multicellular, unlike bacteria, which are prokaryotic, unlike protists, which are eukaryotic but unicellular. Unlike plants and algae, which produce their own nutrients animals are heterotrophic, feeding on organic material and digesting it internally. With few exceptions, animals breathe oxygen and respire aerobically. All animals are motile during at least part of their life cycle, but some animals, such as sponges, corals and barnacles become sessile; the blastula is a stage in embryonic development, unique to most animals, allowing cells to be differentiated into specialised tissues and organs.
All animals are composed of cells, surrounded by a characteristic extracellular matrix composed of collagen and elastic glycoproteins. During development, the animal extracellular matrix forms a flexible framework upon which cells can move about and be reorganised, making the formation of complex structures possible; this may be calcified, forming structures such as shells and spicules. In contrast, the cells of other multicellular organisms are held in place by cell walls, so develop by progressive growth. Animal cells uniquely possess the cell junctions called tight junctions, gap junctions, desmosomes. With few exceptions—in particular, the sponges and placozoans—animal bodies are differentiated into tissues; these include muscles, which enable locomotion, nerve tissues, which transmit signals and coordinate the body. There is an internal digestive chamber with either one opening or two openings. Nearly all animals make use of some form of sexual reproduction, they produce haploid gametes by meiosis.
These fuse to form zygotes, which develop via mitosis into a hollow sphere, called a blastula. In sponges, blastula larvae swim to a new location, attach to the seabed, develop into a new sponge. In most other groups, the blastula undergoes more complicated rearrangement, it first invaginates to form a gastrula with a digestive chamber and two separate germ layers, an external ectoderm and an internal endoderm. In most cases, a third germ layer, the mesoderm develops between them; these germ layers differentiate to form tissues and organs. Repeated instances of mating with a close relative during sexual reproduction leads to inbreeding depression within a population due to the increased prevalence of harmful recessive traits. Animals have evolved numerous mechanisms for avoiding close inbreeding. In some species, such as the splendid fairywren, females benefit by mating with multiple males, thus producing more offspring of higher genetic quality; some animals are capable of asexual reproduction, which results
Nagasaki is the capital and the largest city of Nagasaki Prefecture on the island of Kyushu in Japan. The city's name, 長崎, means "long cape" in Japanese. Nagasaki became a centre of colonial Portuguese and Dutch influence in the 16th through 19th centuries, the Hidden Christian Sites in the Nagasaki Region have been recognized and included in the UNESCO World Heritage List. Part of Nagasaki was home to a major Imperial Japanese Navy base during the First Sino-Japanese War and Russo-Japanese War. During World War II, the American atomic bombings of Hiroshima and Nagasaki made Nagasaki the second and, to date, last city in the world to experience a nuclear attack; as of 1 March 2017, the city has an estimated population of 425,723 and a population density of 1,000 people per km2. The total area is 406.35 km2. Nagasaki is a Japanese port city, occupied by the Portuguese in the late 16th century. A small fishing village set in a secluded harbor, Nagasaki had little historical significance until contact with Portuguese explorers in 1543.
An early visitor was Fernão Mendes Pinto, who came from Sagres on a Portuguese ship which landed nearby in Tanegashima. Soon after, Portuguese ships started sailing to Japan as regular trade freighters, thus increasing the contact and trade relations between Japan and the rest of the world, with mainland China, with whom Japan had severed its commercial and political ties due to a number of incidents involving Wokou piracy in the South China Sea, with the Portuguese now serving as intermediaries between the two Asian countries. Despite the mutual advantages derived from these trading contacts, which would soon be acknowledged by all parties involved, the lack of a proper seaport in Kyūshū for the purpose of harboring foreign ships posed a major problem for both merchants and the Kyushu daimyōs who expected to collect great advantages from the trade with the Portuguese. In the meantime, Spanish Jesuit missionary St. Francis Xavier arrived in Kagoshima, South Kyūshū, in 1549, soon initiated a thorough campaign of evangelization throughout Japan, left for China in 1552 and died soon afterwards.
His followers who remained behind converted a number of daimyōs. The most notable among them was Ōmura Sumitada. In 1569, Ōmura granted a permit for the establishment of a port with the purpose of harboring Portuguese ships in Nagasaki, set up in 1571, under the supervision of the Jesuit missionary Gaspar Vilela and Portuguese Captain-Major Tristão Vaz de Veiga, with Ōmura's personal assistance; the little harbor village grew into a diverse port city, Portuguese products imported through Nagasaki were assimilated into popular Japanese culture. Tempura derived from a popular Portuguese recipe known as peixinho-da-horta, takes its name from the Portuguese word,'tempero,' seasoning, refers to the tempora quadragesima, forty days of Lent during which eating meat was for bidden, another example of the enduring effects of this cultural exchange; the Portuguese brought with them many goods from China. Due to the instability during the Sengoku period and Jesuit leader Alexandro Valignano conceived a plan to pass administrative control over to the Society of Jesus rather than see the Catholic city taken over by a non-Catholic daimyō.
Thus, for a brief period after 1580, the city of Nagasaki was a Jesuit colony, under their administrative and military control. It became a refuge for Christians escaping maltreatment in other regions of Japan. In 1587, Toyotomi Hideyoshi's campaign to unify the country arrived in Kyūshū. Concerned with the large Christian influence in southern Japan, as well as the active and what was perceived as the arrogant role the Jesuits were playing in the Japanese political arena, Hideyoshi ordered the expulsion of all missionaries, placed the city under his direct control. However, the expulsion order went unenforced, the fact remained that most of Nagasaki's population remained practicing Catholic. In 1596, the Spanish ship San Felipe was wrecked off the coast of Shikoku, Hideyoshi learned from its pilot that the Spanish Franciscans were the vanguard of an Iberian invasion of Japan. In response, Hideyoshi ordered the crucifixions of twenty-six Catholics in Nagasaki on February 5 of the next year. Portuguese traders were not ostracized, so the city continued to thrive.
In 1602, Augustinian missionaries arrived in Japan, when Tokugawa Ieyasu took power in 1603, Catholicism was still tolerated. Many Catholic daimyōs had been critical allies at the Battle of Sekigahara, the Tokugawa position was not strong enough to move against them. Once Osaka Castle had been taken and Toyotomi Hideyoshi's offspring killed, the Tokugawa dominance was assured. In addition, the Dutch and English presence allowed trade without religious strings attached. Thus, in 1614, Catholicism was banned and all missionaries ordered to leave. Most Catholic daimyo apostatized, forced their subjects to do so, although a few would not renounce the religion and left the country for Macau and Japantowns in Southeast Asia. A brutal campaign of persecution followed, with thousands of converts across Kyūshū and other parts of Japan killed, tortured, or forced to renounce their religion. Catholicism's last gasp as an open religion and the last major military action in Japan until the Meiji Restoration was the Shimabara Rebellion of 1637.
While there is no evidence that Europeans directly incited the rebellion