1.
Taxonomy (biology)
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Taxonomy is the science of defining groups of biological organisms on the basis of shared characteristics and giving names to those groups. The exact definition of taxonomy varies from source to source, but the core of the remains, the conception, naming. There is some disagreement as to whether biological nomenclature is considered a part of taxonomy, the broadest meaning of taxonomy is used here. The word taxonomy was introduced in 1813 by Candolle, in his Théorie élémentaire de la botanique, the term alpha taxonomy is primarily used today to refer to the discipline of finding, describing, and naming taxa, particularly species. In earlier literature, the term had a different meaning, referring to morphological taxonomy, ideals can, it may be said, never be completely realized. They have, however, a value of acting as permanent stimulants. Some of us please ourselves by thinking we are now groping in a beta taxonomy, turrill thus explicitly excludes from alpha taxonomy various areas of study that he includes within taxonomy as a whole, such as ecology, physiology, genetics, and cytology. He further excludes phylogenetic reconstruction from alpha taxonomy, thus, Ernst Mayr in 1968 defined beta taxonomy as the classification of ranks higher than species. This activity is what the term denotes, it is also referred to as beta taxonomy. How species should be defined in a group of organisms gives rise to practical and theoretical problems that are referred to as the species problem. The scientific work of deciding how to define species has been called microtaxonomy, by extension, macrotaxonomy is the study of groups at higher taxonomic ranks, from subgenus and above only, than species. While some descriptions of taxonomic history attempt to date taxonomy to ancient civilizations, earlier works were primarily descriptive, and focused on plants that were useful in agriculture or medicine. There are a number of stages in scientific thinking. Early taxonomy was based on criteria, the so-called artificial systems. Later came systems based on a complete consideration of the characteristics of taxa, referred to as natural systems, such as those of de Jussieu, de Candolle and Bentham. The publication of Charles Darwins Origin of Species led to new ways of thinking about classification based on evolutionary relationships and this was the concept of phyletic systems, from 1883 onwards. This approach was typified by those of Eichler and Engler, the advent of molecular genetics and statistical methodology allowed the creation of the modern era of phylogenetic systems based on cladistics, rather than morphology alone. Taxonomy has been called the worlds oldest profession, and naming and classifying our surroundings has likely been taking place as long as mankind has been able to communicate
2.
Bacteria
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Bacteria constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria have a number of shapes, ranging from spheres to rods, Bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, Bacteria also live in symbiotic and parasitic relationships with plants and animals. Most bacteria have not been characterised, and only half of the bacterial phyla have species that can be grown in the laboratory. The study of bacteria is known as bacteriology, a branch of microbiology, There are typically 40 million bacterial cells in a gram of soil and a million bacterial cells in a millilitre of fresh water. There are approximately 5×1030 bacteria on Earth, forming a biomass which exceeds that of all plants, Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of bodies and bacteria are responsible for the putrefaction stage in this process. In March 2013, data reported by researchers in October 2012, was published and it was suggested that bacteria thrive in the Mariana Trench, which with a depth of up to 11 kilometres is the deepest known part of the oceans. Other researchers reported related studies that microbes thrive inside rocks up to 580 metres below the sea floor under 2.6 kilometres of ocean off the coast of the northwestern United States. According to one of the researchers, You can find microbes everywhere—theyre extremely adaptable to conditions, the vast majority of the bacteria in the body are rendered harmless by the protective effects of the immune system, though many are beneficial particularly in the gut flora. However several species of bacteria are pathogenic and cause diseases, including cholera, syphilis, anthrax, leprosy. The most common fatal diseases are respiratory infections, with tuberculosis alone killing about 2 million people per year. In developed countries, antibiotics are used to treat infections and are also used in farming, making antibiotic resistance a growing problem. Once regarded as constituting the class Schizomycetes, bacteria are now classified as prokaryotes. Unlike cells of animals and other eukaryotes, bacterial cells do not contain a nucleus and these evolutionary domains are called Bacteria and Archaea. The ancestors of modern bacteria were unicellular microorganisms that were the first forms of life to appear on Earth, for about 3 billion years, most organisms were microscopic, and bacteria and archaea were the dominant forms of life. In 2008, fossils of macroorganisms were discovered and named as the Francevillian biota, however, gene sequences can be used to reconstruct the bacterial phylogeny, and these studies indicate that bacteria diverged first from the archaeal/eukaryotic lineage. Bacteria were also involved in the second great evolutionary divergence, that of the archaea, here, eukaryotes resulted from the entering of ancient bacteria into endosymbiotic associations with the ancestors of eukaryotic cells, which were themselves possibly related to the Archaea
3.
Photosynthesis
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Photosynthesis is a process used by plants and other organisms to convert light energy into chemical energy that can later be released to fuel the organisms activities. In most cases, oxygen is released as a waste product. Most plants, most algae, and cyanobacteria perform photosynthesis, such organisms are called photoautotrophs, in plants, these proteins are held inside organelles called chloroplasts, which are most abundant in leaf cells, while in bacteria they are embedded in the plasma membrane. In these light-dependent reactions, some energy is used to strip electrons from suitable substances, such as water, in the Calvin cycle, atmospheric carbon dioxide is incorporated into already existing organic carbon compounds, such as ribulose bisphosphate. Using the ATP and NADPH produced by the light-dependent reactions, the compounds are then reduced and removed to form further carbohydrates. Cyanobacteria appeared later, the oxygen they produced contributed directly to the oxygenation of the Earth. Today, the rate of energy capture by photosynthesis globally is approximately 130 terawatts. Photosynthetic organisms also convert around 100–115 thousand million tonnes of carbon into biomass per year. Photosynthetic organisms are photoautotrophs, which means that they are able to synthesize food directly from carbon dioxide, however, not all organisms that use light as a source of energy carry out photosynthesis, photoheterotrophs use organic compounds, rather than carbon dioxide, as a source of carbon. In plants, algae, and cyanobacteria, photosynthesis releases oxygen and this is called oxygenic photosynthesis and is by far the most common type of photosynthesis used by living organisms. Although there are differences between oxygenic photosynthesis in plants, algae, and cyanobacteria, the overall process is quite similar in these organisms. There are also varieties of anoxygenic photosynthesis, used mostly by certain types of bacteria. Carbon dioxide is converted into sugars in a process called carbon fixation, photosynthesis provides the energy in the form of free electrons that are used to split carbon from carbon dioxide that is then used to fix that carbon once again as carbohydrate. Carbon fixation is a redox reaction, so photosynthesis supplies the energy that drives both process. In the first stage, light-dependent reactions or light reactions capture the energy of light and use it to make the energy-storage molecules ATP, during the second stage, the light-independent reactions use these products to capture and reduce carbon dioxide. Most organisms that utilize oxygenic photosynthesis use visible light for the light-dependent reactions, some organisms employ even more radical variants of photosynthesis. Some archea use a method that employs a pigment similar to those used for vision in animals. The bacteriorhodopsin changes its configuration in response to sunlight, acting as a proton pump and this produces a proton gradient more directly, which is then converted to chemical energy
4.
Hydrogen
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Hydrogen is a chemical element with chemical symbol H and atomic number 1. With a standard weight of circa 1.008, hydrogen is the lightest element on the periodic table. Its monatomic form is the most abundant chemical substance in the Universe, non-remnant stars are mainly composed of hydrogen in the plasma state. The most common isotope of hydrogen, termed protium, has one proton, the universal emergence of atomic hydrogen first occurred during the recombination epoch. At standard temperature and pressure, hydrogen is a colorless, odorless, tasteless, non-toxic, nonmetallic, since hydrogen readily forms covalent compounds with most nonmetallic elements, most of the hydrogen on Earth exists in molecular forms such as water or organic compounds. Hydrogen plays an important role in acid–base reactions because most acid-base reactions involve the exchange of protons between soluble molecules. In ionic compounds, hydrogen can take the form of a charge when it is known as a hydride. The hydrogen cation is written as though composed of a bare proton, Hydrogen gas was first artificially produced in the early 16th century by the reaction of acids on metals. Industrial production is mainly from steam reforming natural gas, and less often from more energy-intensive methods such as the electrolysis of water. Most hydrogen is used near the site of its production, the two largest uses being fossil fuel processing and ammonia production, mostly for the fertilizer market, Hydrogen is a concern in metallurgy as it can embrittle many metals, complicating the design of pipelines and storage tanks. Hydrogen gas is flammable and will burn in air at a very wide range of concentrations between 4% and 75% by volume. The enthalpy of combustion is −286 kJ/mol,2 H2 + O2 →2 H2O +572 kJ Hydrogen gas forms explosive mixtures with air in concentrations from 4–74%, the explosive reactions may be triggered by spark, heat, or sunlight. The hydrogen autoignition temperature, the temperature of spontaneous ignition in air, is 500 °C, the detection of a burning hydrogen leak may require a flame detector, such leaks can be very dangerous. Hydrogen flames in other conditions are blue, resembling blue natural gas flames, the destruction of the Hindenburg airship was a notorious example of hydrogen combustion and the cause is still debated. The visible orange flames in that incident were the result of a mixture of hydrogen to oxygen combined with carbon compounds from the airship skin. H2 reacts with every oxidizing element, the ground state energy level of the electron in a hydrogen atom is −13.6 eV, which is equivalent to an ultraviolet photon of roughly 91 nm wavelength. The energy levels of hydrogen can be calculated fairly accurately using the Bohr model of the atom, however, the atomic electron and proton are held together by electromagnetic force, while planets and celestial objects are held by gravity. The most complicated treatments allow for the effects of special relativity
5.
Hydrothermal vent
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A hydrothermal vent is a fissure in a planets surface from which geothermally heated water issues. Hydrothermal vents are found near volcanically active places, areas where tectonic plates are moving apart, ocean basins. Hydrothermal vents exist because the earth is both active and has large amounts of water on its surface and within its crust. Common land types include hot springs, fumaroles and geysers, under the sea, hydrothermal vents may form features called black smokers. Chemosynthetic bacteria and archaea form the base of the chain, supporting diverse organisms, including giant tube worms, clams, limpets. Active hydrothermal vents are believed to exist on Jupiters moon Europa, and Saturns moon Enceladus, Hydrothermal vents in the deep ocean typically form along the mid-ocean ridges, such as the East Pacific Rise and the Mid-Atlantic Ridge. These are locations where two plates are diverging and new crust is being formed. The proportion of each varies from location to location, in contrast to the approximately 2 °C ambient water temperature at these depths, water emerges from these vents at temperatures ranging from 60 to as high as 464 °C. Due to the hydrostatic pressure at these depths, water may exist in either its liquid form or as a supercritical fluid at such temperatures. The critical point of water is 375 °C at a pressure of 218 atmospheres, however, introducing salinity into the fluid raises the critical point to higher temperatures and pressures. The critical point of seawater is 407 °C and 298.5 bars, accordingly, if a hydrothermal fluid with a salinity of 3.2 wt. % NaCl vents above 407 °C and 298.5 bars, furthermore, the salinity of vent fluids have been shown to vary widely due to phase separation in the crust. The critical point for lower salinity fluids is at lower temperature and pressure conditions than that for seawater, for example, a vent fluid with a 2.24 wt. % NaCl salinity has the point at 400 °C and 280.5 bars. Thus, water emerging from the hottest parts of some hydrothermal vents can be a supercritical fluid, examples of supercritical venting are found at several sites. Sister Peak vents low salinity phase-separated, vapor-type fluids, sustained venting was not found to be supercritical but a brief injection of 464 °C was well above supercritical conditions. A nearby site, Turtle Pits, was found to vent low salinity fluid at 407 °C, which is above the critical point of the fluid at that salinity. A vent site in the Cayman Trough named Beebe, which is the worlds deepest known hydrothermal site at ~5000 m below sea level, has shown sustained supercritical venting at 401 °C and 2.3 wt% NaCl
6.
Mexico
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Mexico, officially the United Mexican States, is a federal republic in the southern half of North America. It is bordered to the north by the United States, to the south and west by the Pacific Ocean, to the southeast by Guatemala, Belize, and the Caribbean Sea, and to the east by the Gulf of Mexico. Covering almost two million square kilometers, Mexico is the sixth largest country in the Americas by total area, Mexico is a federation comprising 31 states and a federal district that is also its capital and most populous city. Other metropolises include Guadalajara, Monterrey, Puebla, Toluca, Tijuana, pre-Columbian Mexico was home to many advanced Mesoamerican civilizations, such as the Olmec, Toltec, Teotihuacan, Zapotec, Maya and Aztec before first contact with Europeans. In 1521, the Spanish Empire conquered and colonized the territory from its base in Mexico-Tenochtitlan, Three centuries later, this territory became Mexico following recognition in 1821 after the colonys Mexican War of Independence. The tumultuous post-independence period was characterized by instability and many political changes. The Mexican–American War led to the cession of the extensive northern borderlands, one-third of its territory. The Pastry War, the Franco-Mexican War, a civil war, the dictatorship was overthrown in the Mexican Revolution of 1910, which culminated with the promulgation of the 1917 Constitution and the emergence of the countrys current political system. Mexico has the fifteenth largest nominal GDP and the eleventh largest by purchasing power parity, the Mexican economy is strongly linked to those of its North American Free Trade Agreement partners, especially the United States. Mexico was the first Latin American member of the Organisation for Economic Co-operation and Development and it is classified as an upper-middle income country by the World Bank and a newly industrialized country by several analysts. By 2050, Mexico could become the fifth or seventh largest economy. The country is considered both a power and middle power, and is often identified as an emerging global power. Due to its culture and history, Mexico ranks first in the Americas. Mexico is a country, ranking fourth in the world by biodiversity. In 2015 it was the 9th most visited country in the world, Mexico is a member of the United Nations, the World Trade Organization, the G8+5, the G20, the Uniting for Consensus and the Pacific Alliance. Mēxihco is the Nahuatl term for the heartland of the Aztec Empire, namely, the Valley of Mexico, and its people, the Mexica and this became the future State of Mexico as a division of New Spain prior to independence. It is generally considered to be a toponym for the valley became the primary ethnonym for the Aztec Triple Alliance as a result. After New Spain won independence from Spain, representatives decided to name the new country after its capital and this was founded in 1524 on top of the ancient Mexica capital of Mexico-Tenochtitlan
7.
Pacific Ocean
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The Pacific Ocean is the largest and deepest of the Earths oceanic divisions. It extends from the Arctic Ocean in the north to the Southern Ocean in the south and is bounded by Asia and Australia in the west, the Mariana Trench in the western North Pacific is the deepest point in the world, reaching a depth of 10,911 metres. Both the center of the Water Hemisphere and the Western Hemisphere are in the Pacific Ocean, the oceans current name was coined by Portuguese explorer Ferdinand Magellan during the Spanish circumnavigation of the world in 1521, as he encountered favourable winds on reaching the ocean. He called it Mar Pacífico, which in both Portuguese and Spanish means peaceful sea, important human migrations occurred in the Pacific in prehistoric times. Long-distance trade developed all along the coast from Mozambique to Japan, trade, and therefore knowledge, extended to the Indonesian islands but apparently not Australia. By at least 878 when there was a significant Islamic settlement in Canton much of trade was controlled by Arabs or Muslims. In 219 BC Xu Fu sailed out into the Pacific searching for the elixir of immortality, from 1404 to 1433 Zheng He led expeditions into the Indian Ocean. The east side of the ocean was discovered by Spanish explorer Vasco Núñez de Balboa in 1513 after his expedition crossed the Isthmus of Panama and he named it Mar del Sur because the ocean was to the south of the coast of the isthmus where he first observed the Pacific. Later, Portuguese explorer Ferdinand Magellan sailed the Pacific East to West on a Castilian expedition of world circumnavigation starting in 1519, Magellan called the ocean Pacífico because, after sailing through the stormy seas off Cape Horn, the expedition found calm waters. The ocean was often called the Sea of Magellan in his honor until the eighteenth century, sailing around and east of the Moluccas, between 1525 and 1527, Portuguese expeditions discovered the Caroline Islands, the Aru Islands, and Papua New Guinea. In 1542–43 the Portuguese also reached Japan, in 1564, five Spanish ships consisting of 379 explorers crossed the ocean from Mexico led by Miguel López de Legazpi and sailed to the Philippines and Mariana Islands. The Manila galleons operated for two and a half centuries linking Manila and Acapulco, in one of the longest trade routes in history, Spanish expeditions also discovered Tuvalu, the Marquesas, the Cook Islands, the Solomon Islands, and the Admiralty Islands in the South Pacific. In the 16th and 17th century Spain considered the Pacific Ocean a Mare clausum—a sea closed to other naval powers, as the only known entrance from the Atlantic the Strait of Magellan was at times patrolled by fleets sent to prevent entrance of non-Spanish ships. On the western end of the Pacific Ocean the Dutch threatened the Spanish Philippines, Spain also sent expeditions to the Pacific Northwest reaching Vancouver Island in southern Canada, and Alaska. The French explored and settled Polynesia, and the British made three voyages with James Cook to the South Pacific and Australia, Hawaii, and the North American Pacific Northwest, one of the earliest voyages of scientific exploration was organized by Spain in the Malaspina Expedition of 1789–1794. It sailed vast areas of the Pacific, from Cape Horn to Alaska, Guam and the Philippines, New Zealand, Australia, and the South Pacific. Growing imperialism during the 19th century resulted in the occupation of much of Oceania by other European powers, and later, Japan, in Oceania, France got a leading position as imperial power after making Tahiti and New Caledonia protectorates in 1842 and 1853 respectively. After navy visits to Easter Island in 1875 and 1887, Chilean navy officer Policarpo Toro managed to negotiate an incorporation of the island into Chile with native Rapanui in 1888, by occupying Easter Island, Chile joined the imperial nations
8.
Photosynthetic reaction centre
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A photosynthetic reaction centre is a complex of several proteins, pigments and other co-factors that together execute the primary energy conversion reactions of photosynthesis. These co-factors are light-absorbing molecules such as chlorophyll and phaeophytin, as well as quinones, the energy of the photon is used to excite an electron of a pigment. The free energy created is used to reduce a chain of nearby electron acceptors. Reaction centers are present in all plants, algae. Although these species are separated by billions of years of evolution, in contrast, a large variety in light-harvesting complexes exist between the photosynthetic species. Green plants and algae have two different types of centers that are part of larger supercomplexes known as photosystem I P700. The structures of these supercomplexes are large, involving multiple light-harvesting complexes, a reaction center is laid out in such a way that it captures the energy of a photon using pigment molecules and turns it into a usable form. Light is made up of small bundles of energy called photons, if a photon with the right amount of energy hits an electron, it will raise the electron to a higher energy level. Electrons are most stable at their lowest energy level, what is called its ground state. In this state, the electron is in the orbit that has the least amount of energy, electrons in higher energy levels can return to ground state in a manner analogous to a ball falling down a staircase. In doing so, the electrons release energy and this is the process that is exploited by a photosynthetic reaction center. When an electron rises to an energy level, there is a corresponding decrease in the reduction potential of the molecule in which the electron resides occurs. This means that the molecule has a tendency to donate electrons. Both the ATP and NADPH are used in the Calvin cycle to fix carbon dioxide into triose sugars, the bacterial photosynthetic reaction center has been an important model to understand the structure and chemistry of the biological process of capturing light energy. In the 1960s, Roderick Clayton was the first to purify the reaction center complex from purple bacteria, however, the first crystal structure was determined in 1984 by Hartmut Michel, Johann Deisenhofer and Robert Huber for which they shared the Nobel Prize in 1988. This was also significant, since it was the first structure for any membrane protein complex, four different subunits were found to be important for the function of the photosynthetic reaction center. The L and M subunits, shown in blue and purple in the image of the structure and they are structurally similar to one another, both having 5 transmembrane alpha helices. Four bacteriochlorophyll b molecules, two bacteriophaeophytin b molecules molecules, two quinones, and a ferrous ion are associated with the L and M subunits, the H subunit, shown in gold, lies on the cytoplasmic side of the plasma membrane
9.
Macromolecule
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A macromolecule is a very large molecule, such as protein, commonly created by polymerization of smaller subunits. They are typically composed of thousands of atoms or more, the most common macromolecules in biochemistry are biopolymers and large non-polymeric molecules. Synthetic macromolecules include common plastics and synthetic fibres as well as materials such as carbon nanotubes. The term macromolecule was coined by Nobel laureate Hermann Staudinger in the 1920s, usage of the term to describe large molecules varies among the disciplines. According to the standard IUPAC definition, the term macromolecule as used in science refers only to a single molecule. For example, a polymeric molecule is appropriately described as a macromolecule or polymer molecule rather than a polymer. Because of their size, macromolecules are not conveniently described in terms of stoichiometry alone, the structure of simple macromolecules, such as homopolymers, may be described in terms of the individual monomer subunit and total molecular mass. Complicated biomacromolecules, on the hand, require multi-faceted structural description such as the hierarchy of structures used to describe proteins. In British English. Macromolecules often have physical properties that do not occur for smaller molecules. For example, DNA in a solution can be simply by sucking the solution through an ordinary straw because the physical forces on the molecule can overcome the strength of its covalent bonds. The 1964 edition of Linus Paulings College Chemistry asserted that DNA in nature is never longer than about 5,000 base pairs and this error arose because biochemists were inadvertently breaking their samples into fragments. In fact, the DNA of chromosomes can be hundreds of millions of base pairs long, another common macromolecular property that does not characterize smaller molecules is their relative insolubility in water and similar solvents, instead forming colloids. Many require salts or particular ions to dissolve in water, similarly, many proteins will denature if the solute concentration of their solution is too high or too low. High concentrations of macromolecules in a solution can alter the rates and equilibrium constants of the reactions of other macromolecules and this comes from macromolecules excluding other molecules from a large part of the volume of the solution, thereby increasing the effective concentrations of these molecules. All living organisms are dependent on three essential biopolymers for their functions, DNA, RNA and Proteins. Each of these molecules is required for life since each plays a distinct, the simple summary is that DNA makes RNA, and then RNA makes proteins. DNA, RNA and proteins all consist of a structure of related building blocks. In general, they are all unbranched polymers, and so can be represented in the form of a string
10.
Winogradsky column
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The Winogradsky column is a simple device for culturing a large diversity of microorganisms. Incubating the column in sunlight for months results in a gradient as well as a sulfide gradient. The column provides numerous gradients, depending on nutrients, from which the variety of aforementioned organisms can grow. The aerobic water phase and anaerobic mud or soil phase are one such distinction, because of oxygens low solubility in water, the water quickly becomes anoxic towards the interface of the mud and water. Anaerobic phototrophs are present to a large extent in the mud phase. Algae and other aerobic phototrophs are present along the surface and water of the half of the columns. Green growth is attributed to these organisms. The column is a mixture of ingredients – exact measurements are not critical. A tall glass or plastic tube is filled one third full of mud, omitting any sticks, debris. Supplementation of ~0. 25% w/w calcium carbonate and ~0. 50% w/w calcium sulfate or sodium sulfate is required, mixed in with some shredded newspaper or hay, an additional anaerobic layer, this time of unsupplemented mud, brings the container to two thirds full. Alternatively, some call for sand to be used for the layer above the enriched sediment as to allow for easier observation. This is followed by water from the pond to saturate the mud, the column is sealed tightly to prevent evaporation of water and incubated for several months in strong natural light. After the column is sealed tightly the anaerobic bacteria will develop first and these anaerobic bacteria will consume the cellulose as an energy source. Once this commences they create CO2 that is used by other bacteria, eventually colour layers of different bacteria will appear in the column. This top layer of aerobic bacteria, produces CO2 which feeds back into the column creating further reaction, while the Winogradsky column is an excellent tool to see whole communities of bacteria, it does not allow one to see the densities or individual bacterial colonies. It also takes a time to complete its cycle. However its importance in environmental microbiology should not be overlooked and it is still an excellent tool to determine the major communities in a sample. List of Russian inventions Animated tutorial by Science Education Resource Center — Carleton College Winogradsky column, perpetual life in a tube — Edinburgh University
11.
Autotroph
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An autotroph or producer, is an organism that produces complex organic compounds from simple substances present in its surroundings, generally using energy from light or inorganic chemical reactions. They are the producers in a chain, such as plants on land or contrast to heterotrophs as consumers of autotrophs). They do not need a source of energy or organic carbon. Autotrophs can reduce carbon dioxide to organic compounds for biosynthesis. Most autotrophs use water as the agent, but some can use other hydrogen compounds such as hydrogen sulfide. Some autotrophs, like plants and algae, are phototrophs. Autotrophs can be photoautotrophs or chemoautotrophs, lithotrophs use inorganic compounds, such as hydrogen sulfide, elemental sulfur, ammonium and ferrous iron, as reducing agents for biosynthesis and chemical energy storage. Photoautotrophs and lithoautotrophs use a portion of the ATP produced during photosynthesis or the oxidation of inorganic compounds to reduce NADP+ to NADPH to form organic compounds, the greek term autotroph was coined by the german botanist Albert Bernhard Frank in 1892. Some organisms rely on organic compounds as a source of carbon, such organisms are not defined as autotrophic, but rather as heterotrophic. Evidence suggests that some fungi may also obtain energy from radiation, such radiotrophic fungi were found growing inside a reactor of the Chernobyl nuclear power plant. Autotrophs are fundamental to the chains of all ecosystems in the world. They take energy from the environment in the form of sunlight or inorganic chemicals and this mechanism is called primary production. Other organisms, called heterotrophs, take in autotrophs as food to carry out functions necessary for their life. Thus, heterotrophs — all animals, almost all fungi, as well as most bacteria and protozoa — depend on autotrophs, or primary producers, for the energy, heterotrophs obtain energy by breaking down organic molecules obtained in food. Carnivorous organisms rely on autotrophs indirectly, as the nutrients obtained from their heterotroph prey come from autotrophs they have consumed, most ecosystems are supported by the autotrophic primary production of plants that capture photons initially released by the sun. Plants convert and store the energy of the photon into the bonds of simple sugars during photosynthesis. These plant sugars are polymerized for storage as long-chain carbohydrates, including other sugars, starch, when autotrophs are eaten by heterotrophs, i. e. consumers such as animals, the carbohydrates, fats, and proteins contained in them become energy sources for the heterotrophs. Proteins can be made using nitrates, sulfates, and phosphates in the soil, autotroph Chemoautotroph Lithotroph Photoautotroph Heterotroph Chemoheterotroph Lithotroph Photoheterotroph Organotroph Primary nutritional groups Heterotrophic nutrition
12.
Phototroph
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Phototrophs are the organisms that carry out photon capture to acquire energy. They use the energy from light to carry out various cellular metabolic processes and it is a common misconception that phototrophs are obligatorily photosynthetic. Phototrophs can be either autotrophs or heterotrophs, originally used with a different meaning, the term took its current definition after Lwoff and collaborators. Most of the well-recognized phototrophs are autotrophic, also known as photoautotrophs and they can be contrasted with chemotrophs that obtain their energy by the oxidation of electron donors in their environments. Photoautotrophs are capable of synthesizing their own food from inorganic substances using light as an energy source, green plants and photosynthetic bacteria are photoautotrophs. Photoautotrophic organisms are referred to as holophytic. Such organisms derive their energy for food synthesis from light and are capable of using carbon dioxide as their source of carbon. Oxygenic photosynthetic organisms use chlorophyll for light-energy capture and oxidize water, in an ecological context, phototrophs are often the food source for neighboring heterotrophic life. In terrestrial environments, plants are the predominant variety, while aquatic environments include a range of organisms such as algae, other protists, phytoplankton. The depth to which sunlight or artificial light can penetrate into water, cyanobacteria, which are prokaryotic organisms which carry out oxygenic photosynthesis, occupy many environmental conditions, including fresh water, seas, soil, and lichen. Cyanobacteria carry out plant-like photosynthesis because the organelle in plants that carries out photosynthesis is actually derived from an endosymbiosis cyanobacteria and this bacteria can use water as a source of electrons in order to perform CO2 reduction reactions. A photolithoautotroph is an organism that uses light energy, and an inorganic electron donor. In contrast to photoautotrophs, photoheterotrophs are organisms that depend solely on light for their energy, photoheterotrophs produce ATP through photophosphorylation but use environmentally obtained organic compounds to build structures and other bio-molecules. Autotroph Chemoautotroph Photoautotroph Heterotroph Chemoheterotroph Photoheterotroph Primary nutritional groups Prototroph
