Mälaren, historically referred to as Lake Malar in English, is the third-largest freshwater lake in Sweden. Its area is 1,140 km2 and its greatest depth is 64 m. Mälaren spans 120 kilometers from east to west. The lake drains, from south-west to north-east, into the Baltic Sea through its natural outlets Norrström and Söderström and through the artificial Södertälje Canal and Hammarbyleden waterway. The easternmost bay of Mälaren, in central Stockholm, is called Riddarfjärden. The lake is located in Svealand and bounded by the provinces of Uppland, Södermanland and Västmanland. The two largest islands in Mälaren are Selaön (91 km2) and Svartsjölandet (79 km2). Mälaren is low-lying and mostly relatively shallow.

Vänern is the largest lake in Sweden, the largest lake in the European Union and the third-largest lake in Europe after Ladoga and Onega in Russia. It is located in the provinces of Västergötland, Dalsland, and Värmland in the southwest of the country. With its surface located at 44 metres (144 ft) with a maximum depth of 106 metres (348 ft), the lowest point of the Vänern basin is at 62 metres (203 ft) below sea level. The average depth is at a more modest 28 metres (92 ft), which means that the average point of the lake floor remains above sea level.