The Pepperdine Waves baseball team represents Pepperdine University in the sport of baseball. The Pepperdine Waves compete in Division I of the National Collegiate Athletics Association (NCAA) and in the West Coast Conference. They are currently led by head coach Rick Hirtensteiner.

Richard Scott Hirtensteiner is the head coach for the Pepperdine Waves baseball team as of December 2020. He previously played at Pepperdine for four years, earning All-American honors in 1989. In 1987, he represented the United States in the Pan American Games. From 1989 to 1994, he played professionally.