Stockton Channel is a waterway in California's Sacramento–San Joaquin River Delta. It runs 2.5 miles from the San Joaquin River-Stockton Deepwater Shipping Channel at the Port of Stockton to McLeod Lake in Downtown Stockton. The Stockton Channel is contained by levees, with Miners Levee is on the north side and Tuleburg Levee on the south side. The Mormon Slough branches off the Stockton Channel to the Southeast. The Smith Channel runs parallel to the north of the Stockton Channel. Interstate 5 crosses the Channel at its midpoint.

Stockton Deepwater Shipping Channel also called the Baldwin-Stockton Deepwater Shipping Channel or Stockton Deep Water Channel is a manmade deepwater water channel that runs from Suisun Bay and the Sacramento River - Sacramento Deep Water Ship Channel to the Port of Stockton and the Stockton Channel in California. The Stockton Ship Channel is 41 mi (66 km) long and about 37 ft (11 m) deep, allowing up to Panama Canal size ocean ships access to the Port of Stockton at the City of Stockton. The Stockton Deepwater Shipping Channel is part of the vast Sacramento–San Joaquin River Delta that has a connection to the Pacific Ocean. Stockton Deepwater Shipping Channel is also called the lower San Joaquin River.