The fifth and final season of Yu-Gi-Oh! 5D's lasts from episodes 135 to 154. As the Ark Cradle descends on New Domino City, the final stage of Yliaster's plan is set into motion. This season uses four pieces of theme music. For episodes 130 to 154, the opening theme is "Road to Tomorrow - Going My Way!" by Masaaki Endoh, while the ending theme is "Future Colors" by Plastic Tree. Certain episodes use the insert song: "Clear Mind" by Masaaki Endoh. Episode 154 uses the insert song: "The Melody of Promises," which is also by Masaaki Endoh.

The fourth season of Yu-Gi-Oh! 5D's lasts from episodes 93 to 134. As the WRGP begins, the 3 Emperors of Yliaster begin to make their move. The show uses seven pieces of theme music. For episodes 93 through 103, the opening theme is "Freedom" by La Vie, while the ending theme is 'O-Zone' by Vistlip. For episodes 104 to 129, the opening theme is "BELIEVE IN NEXUS" by Masaaki Endoh, while the ending theme is "Close to You" by Alvino ~Alchemy vision normal~. For episodes 130 to 154, the opening theme is "Road to Tomorrow - Going My Way!" by Masaaki Endoh, while the ending theme is "Future Colors" by Plastic Tree. Certain episodes use the insert song: "Clear Mind" by Masaaki Endoh.